Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
dmrcate
•
reset
8
votes
7
replies
1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 4 months ago by
Daniel E. Weeks
▴ 30
6
votes
12
replies
1.7k
views
Error when loading DMRcate
DMRcate
14 months ago
Bazingastats
• 0
4
votes
9
replies
3.0k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
differencial methylation
updated 2.5 years ago by
jfertaj
▴ 30 • written 3.9 years ago by
Jeni
▴ 10
3
votes
4
replies
816
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
7 months ago • updated 6 months ago
Jitendra
▴ 10
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation
Epic
annotation
DMRcate
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
yoursbassanio
▴ 10
3
votes
2
replies
253
views
Question about DMRcate
DMRcate
dmrcate
11 weeks ago
chuanjiao6
• 0
3
votes
4
replies
1.0k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.6 years ago by
Tim Peters
▴ 170 • written 3.6 years ago by
Jeni
▴ 10
2
votes
2
replies
1.6k
views
DMRcate error: object 'annotated' not found
dmrcate
error
updated 8.3 years ago by
Tim Peters
▴ 170 • written 8.3 years ago by
Eric Smith
• 0
2
votes
6
replies
1.0k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 11 months ago by
Tim Peters
▴ 170 • written 12 months ago by
Grace
• 0
2
votes
18
replies
4.9k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.8 years ago by
574233829
• 0 • written 7.9 years ago by
Giovanni Calice
▴ 160
2
votes
6
replies
1.8k
views
Bumphunting for longitudinal data
bumphunter
minfi
lmer
dmrcate
dmr analysis
updated 5.9 years ago by
Tim Peters
▴ 170 • written 5.9 years ago by
Ashlynn
• 0
2
votes
6
replies
1.7k
views
DMRcate
DMRcate
R
DMRcatedata
Markdown
14 months ago
yr542
• 0
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate
design matrix
updated 8.4 years ago by
Tim Peters
▴ 170 • written 8.4 years ago by
Giovanni Calice
▴ 160
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 16 days ago by
Tim Peters
▴ 170 • written 4 months ago by
rae.alshammari
▴ 10
1
vote
2
replies
1.1k
views
DMRcate error in extractCoords function
software error
DMRcate
extractRanges
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.3 years ago by
Xavier Pastor
▴ 10
1
vote
3
replies
1.2k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
yoursbassanio
▴ 10
1
vote
8
replies
1.7k
views
extract CpGs from DMRcate results
dmrcate
cpgs
results.ranges
DMRcate
updated 3.9 years ago by
Tim Peters
▴ 170 • written 3.9 years ago by
landenshanie
▴ 40
1
vote
2
replies
1.4k
views
DMRcate extractRanges error
DMRcate
3.1 years ago
macsue.jacques
▴ 10
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.8 years ago by
Tim Peters
▴ 170 • written 7.8 years ago by
Giovanni Calice
▴ 160
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate
bumphunter
methylation
epic
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
yoursbassanio
▴ 10
1
vote
1
reply
1.4k
views
DMRcate: phenotype variable with multiple levels
dmr analysis
dmrcate
updated 8.7 years ago by
andrew.j.skelton73
▴ 370 • written 8.7 years ago by
irini.liampa
• 0
1
vote
0
replies
807
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
13 months ago
jose.ramirez1
▴ 10
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi
lumi
methylumi
dmrcate
illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by
Tim Peters
▴ 170 • written 7.1 years ago by
poojitha.stemcell
▴ 10
1
vote
2
replies
1.5k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate
dmrcate
methylation
updated 6.9 years ago by
Tim Peters
▴ 170 • written 6.9 years ago by
Ellen O
• 0
0
votes
0
replies
610
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
14 months ago
gilliangoobie
• 0
0
votes
2
replies
427
views
EPIC array hg38 annotation?
minfi
DMRcate
10 weeks ago • updated 9 weeks ago
mycetes
• 0
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma
illimina 450k methylation
DMRcate
updated 9.0 years ago by
Tim Peters
▴ 170 • written 9.0 years ago by
Brian Smith
▴ 120
0
votes
5
replies
2.1k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.4 years ago
par.larsson
• 0
0
votes
1
reply
967
views
conflicts in chromosome number
DMRcate
updated 7.8 years ago by
Tim Peters
▴ 170 • written 7.8 years ago by
yuping.zhang
• 0
0
votes
9
replies
18k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.5 years ago by
ew17
• 0
0
votes
1
reply
971
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.3 years ago by
Tim Peters
▴ 170 • written 7.3 years ago by
icobo
• 0
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate
visualization
updated 7.2 years ago by
Tim Peters
▴ 170 • written 7.2 years ago by
csugai
• 0
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate
dmr analysis
dmr
updated 7.2 years ago by
Tim Peters
▴ 170 • written 7.2 years ago by
alexandria.andrayas
▴ 10
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 11 weeks ago by
Tim Peters
▴ 170 • written 7.1 years ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ
dmrcate
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.8 years ago by
Yuan Tian
▴ 90 • written 6.8 years ago by
mia
• 0
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate
gene symbol
coordinate
5.8 years ago
574233829
• 0
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate
ChAMP
updated 4.7 years ago by
Yuan Tian
▴ 270 • written 4.7 years ago by
kadm
• 0
0
votes
3
replies
1.3k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.7 years ago by
Tim Peters
▴ 170 • written 4.7 years ago by
anne-kristin.stavrum
• 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 2.8 years ago by
Jovana Maksimovic
▴ 10 • written 3.8 years ago by
yoursbassanio
▴ 10
0
votes
2
replies
780
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.7 years ago
zh9118
• 0
0
votes
0
replies
735
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.4 years ago
Mike
▴ 10
0
votes
0
replies
70
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
15 days ago
Macsue
• 0
0
votes
0
replies
118
views
What is the significance of DMR in DMRcate
DMRcate
10 weeks ago
chuanjiao6
• 0
0
votes
1
reply
878
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
jfertaj
▴ 30
0
votes
0
replies
818
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
2.3 years ago
Ahdee
▴ 50
0
votes
2
replies
934
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate
WGBS
biological_replicate
2.6 years ago
xie186
• 0
0
votes
1
reply
720
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate
DMR.plot
updated 5 months ago by
shepherl
3.8k • written 5 months ago by
Chiara
• 0
0
votes
5
replies
581
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
Jitendra
▴ 10
0
votes
1
reply
459
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 8 months ago by
Tim Peters
▴ 170 • written 8 months ago by
b.curran
• 0
49 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Locations
• All
France,
just now
United States,
4 minutes ago
United States,
13 minutes ago
Ireland,
21 minutes ago
Italy,
32 minutes ago
Traffic: 765 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6