Showing : dmrcate • reset
0
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bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 11 weeks ago by ▴ 170 • written 7.1 years ago by ★ 2.0k
2
votes
6
replies
1.3k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 16 days ago by ▴ 170 • written 4 months ago by ▴ 10
8
votes
7
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1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 4 months ago by ▴ 30
2
votes
6
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1.0k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 11 months ago by ▴ 170 • written 11 months ago by • 0
3
votes
4
replies
816
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
6 months ago Jitendra ▴ 10
0
votes
1
reply
720
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 5 months ago by 3.8k • written 5 months ago by • 0
0
votes
5
replies
581
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 5 months ago by 65k • written 5 months ago by ▴ 10
0
votes
1
reply
459
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 8 months ago by ▴ 170 • written 8 months ago by • 0
0
votes
2
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425
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EPIC array hg38 annotation?
minfi DMRcate
9 weeks ago mycetes • 0
3
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2
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253
views
Question about DMRcate
DMRcate dmrcate
11 weeks ago chuanjiao6 • 0
0
votes
0
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118
views
What is the significance of DMR in DMRcate
DMRcate
10 weeks ago chuanjiao6 • 0
0
votes
0
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70
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
15 days ago Macsue • 0
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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