Biostar Dmrs

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Gviz DMRs

updated 2.5 years ago by Robert Ivanek ▴ 730 • written 2.6 years ago by ayeshatariq78 • 0

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dmrseq dmr dmrs bisulfite methylation

updated 5.0 years ago by keegan ▴ 60 • written 5.0 years ago by l.kremer • 0

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Answer: Error with FindConservedMarkers() by ATpoint ★ 2.1k

Seurat is not a Bioconductor package, please browse their documentation, ask at biostars or open an issue at their GitHub if all that doesn…

Answer: How to add pvalue to boxplot? by ATpoint ★ 2.1k

The support site is for help with Bioconductor. Yours is basic R/ggplot, please search StackOverflow, this has been asked many times before.

Comment: Which input file is used for DGEList in EgdeR? by Michael Love 39k

It does output the Salmon files, and it is documented here: https://nf-co.re/rnaseq/output#pseudo-alignment-and-quantification The first …

Comment: Which input file is used for DGEList in EgdeR? by Michael Love 39k

Does it output Salmon files (directories with `quant.sf` in them)? That would be the easiest. These files you have above are processed and…

Answer: Log2Fold change interpretation - Continuous predictor variable by Michael Love 39k

It can be more sensitive than binary versions, this has been written about in statistical literature. But most of all I would encourage …

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Comment: Genomics data

Comment: recount 3 protect read length metadata

C: Batch correction in DESeq2

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