Bioconductor Dmrseq

Showing : dmrseq • reset

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334

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dmrseq bsseq

updated 5 days ago by Peter Hickey ▴ 740 • written 13 days ago by Juan Higareda • 0

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445

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dmrseq

updated 7 months ago by keegan ▴ 60 • written 11 months ago by giancarlo.castellano • 0

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708

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dmrseq

updated 3.1 years ago by keegan ▴ 60 • written 3.2 years ago by KIR_F • 0

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868

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methylCC deconvolution methylation dmrseq serum

4.0 years ago marcin.bazyliszek • 0

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681

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dmrseq methylation

4.5 years ago sorjuelal • 0

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719

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dmrseq

4.7 years ago Stephanie Hicks ▴ 80

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1.3k

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dmrseq sva DSS

updated 4.9 years ago by keegan ▴ 60 • written 4.9 years ago by gjl ▴ 10

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1.5k

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dmrseq Methylation

updated 4.9 years ago by keegan ▴ 60 • written 4.9 years ago by sorjuelal • 0

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1.3k

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installation problem dmrseq bumphunter

updated 5.5 years ago by shepherl 3.8k • written 5.5 years ago by guy.bioinfo ▴ 10

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2.1k

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dmrseq

updated 5.5 years ago by keegan ▴ 60 • written 5.5 years ago by kuckunniwid • 0

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959

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dmrseq

updated 5.7 years ago by keegan ▴ 60 • written 5.7 years ago by swebb1 • 0

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1.2k

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dmrseq bsseq

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by Bruno Verstraeten • 0

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.2 years ago by l.kremer • 0

13 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Awards • All

Scholar to ATpoint ★ 4.0k