Bioconductor Dmrseq

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dmrseq bsseq

updated 4 days ago by Peter Hickey ▴ 740 • written 12 days ago by Juan Higareda • 0

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dmrseq

updated 7 months ago by keegan ▴ 60 • written 11 months ago by giancarlo.castellano • 0

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…

Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k

The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

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Answer: OrgDb for maize

Comment: Cannabis and KEGGgraph

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Scholar to Michael Love 41k