Showing : dmrseq • reset
3
votes
16
replies
2.1k
views
Internal bug of DMR-Seq?
dmrseq
updated 5.5 years ago by ▴ 60 • written 5.5 years ago by • 0
4
votes
8
replies
285
views
Memory errors using read.bismark?
dmrseq bsseq
updated 18 hours ago by ▴ 740 • written 7 days ago by • 0
6
votes
5
replies
1.3k
views
dmrseq installation failed
installation problem dmrseq bumphunter
updated 5.5 years ago by 3.8k • written 5.5 years ago by ▴ 10
1
vote
4
replies
1.5k
views
dmrseq error: promise already under evaluation??
dmrseq Methylation
updated 4.8 years ago by ▴ 60 • written 4.8 years ago by • 0
0
votes
3
replies
1.2k
views
Determination of Hypo- or Hyper- methylation
dmrseq bsseq
updated 5.9 years ago by 65k • written 5.9 years ago by • 0
0
votes
3
replies
951
views
DMRseq smoothed values
dmrseq
updated 5.7 years ago by ▴ 60 • written 5.7 years ago by • 0
2
votes
2
replies
1.4k
views
dmrseq: cannot adjust for a covariate
dmrseq dmr dmrs bisulfite methylation
updated 6.2 years ago by ▴ 60 • written 6.2 years ago by • 0
0
votes
1
reply
714
views
unequal sample sizes in groups for testCovariate argument in dmrseq
dmrseq
4.7 years ago Stephanie Hicks ▴ 80
0
votes
1
reply
673
views
Suggestion dmrseq: generate Error when the adjustCovariate(s) generates a design that is not full rank
dmrseq methylation
4.5 years ago sorjuelal • 0
0
votes
1
reply
699
views
dmrseq on a subset of genomic regions
dmrseq
updated 3.0 years ago by ▴ 60 • written 3.1 years ago by • 0
1
vote
1
reply
1.3k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq sva DSS
updated 4.8 years ago by ▴ 60 • written 4.9 years ago by ▴ 10
0
votes
1
reply
438
views
dmrseq and polymorphisms
dmrseq
updated 7 months ago by ▴ 60 • written 11 months ago by • 0
0
votes
0
replies
864
views
Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.0 years ago marcin.bazyliszek • 0
13 results • Page 1 of 1
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Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850
This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k
Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k
I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
Answer: rlog transformation by Michael Love 41k
It is dependent on the other samples in the dataset.
Votes
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
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