Bioconductor Dmrseq

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dmrseq

updated 5.5 years ago by keegan ▴ 60 • written 5.5 years ago by kuckunniwid • 0

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dmrseq Methylation

updated 4.9 years ago by keegan ▴ 60 • written 4.9 years ago by sorjuelal • 0

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.2 years ago by l.kremer • 0

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1.3k

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installation problem dmrseq bumphunter

updated 5.5 years ago by shepherl 3.8k • written 5.5 years ago by guy.bioinfo ▴ 10

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1.3k

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dmrseq sva DSS

updated 4.9 years ago by keegan ▴ 60 • written 4.9 years ago by gjl ▴ 10

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1.2k

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dmrseq bsseq

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by Bruno Verstraeten • 0

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959

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dmrseq

updated 5.7 years ago by keegan ▴ 60 • written 5.7 years ago by swebb1 • 0

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868

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methylCC deconvolution methylation dmrseq serum

4.0 years ago marcin.bazyliszek • 0

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719

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dmrseq

4.7 years ago Stephanie Hicks ▴ 80

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708

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dmrseq

updated 3.1 years ago by keegan ▴ 60 • written 3.2 years ago by KIR_F • 0

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681

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dmrseq methylation

4.5 years ago sorjuelal • 0

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445

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dmrseq

updated 7 months ago by keegan ▴ 60 • written 11 months ago by giancarlo.castellano • 0

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332

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dmrseq bsseq

updated 5 days ago by Peter Hickey ▴ 740 • written 12 days ago by Juan Higareda • 0

13 results • Page 1 of 1

Recent ...

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Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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