Bioconductor Dna methylation

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2.4k

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R gdc rna-seq dna methylation

updated 7.4 years ago by Sean Davis 21k • written 7.4 years ago by RichardJActon ▴ 50

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2.6k

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tcgabiolinks dna methylation

updated 8.3 years ago by Marcel Ramos 700 • written 8.3 years ago by michaelwxf2012 • 0

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3.2k

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normalization DNA methylation WGCNA

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by enora.fremy • 0

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1.5k

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microarray HM450 dna methylation cohcap

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by poojitha.stemcell ▴ 10

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2.8k

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dna methylation illimina 450k methylation beta M significance

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by skids121 • 0

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1.5k

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medips medip-seq dna methylation dmr analysis

updated 7.3 years ago by Lukas Chavez ▴ 570 • written 7.3 years ago by mtefit • 0

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2.1k

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minfi normalization outliers dna methylation densityplot

7.6 years ago peter.fransquet • 0

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1.5k

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minfi cell proportion estimateCellCounts DNA Methylation

6.0 years ago grayapply2009 • 0

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1.7k

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CNV minfi preprocessing dna methylation

9.0 years ago Thomas • 0

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1.5k

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dna methylation biseq

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by ahmad.moousavi • 0

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1.5k

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rnbeads methylation methylationepic dna methylation

8.1 years ago gabrielrfries • 0

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1.1k

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differential variability dna methylation iEVORA DVP

7.9 years ago poojitha.stemcell ▴ 10

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1.5k

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minfi bumphunter DNA methylation illumina450k

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by fleur_p90 • 0

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Answer: Quick two questions on limpa by Gordon Smyth 53k

Thanks for your questions about limpa. The short answer is that you should use the default settings of the readSpectronaut() function. The…

Comment: ComplexHeatmap removes row labels if annotation is added by RosaliaSchulist99 • 0

thanks for sharing https://jokergoo.github.io/ComplexHeatmap-reference/book/a-list-of-heatmaps.html#automatic-adjustment-to-the-main-heatmap

Comment: ComplexHeatmap removes row labels if annotation is added by RosaliaSchulist99 • 0

thanks for sharing

Comment: recursively counting package dependencies by Helena • 0

Aha, yes, totally forgot the `Depends` field... I tried with both `Imports/Depends/LinkingTo` and without `LinkingTo` ... I think this is r…

Answer: recursively counting package dependencies by ATpoint ★ 5.0k

Based on https://stat.ethz.ch/pipermail/bioc-devel/2021-October/018596.html it is something like ```r db <- available.packages(repos = …

Votes

Comment: tximeta cannot open annotation gtf?

Answer: tximeta cannot open annotation gtf?

Comment: Question about using LRT test for time course experiments with DESeq2

A: DESeq2 LRT test for multi-factor designs

Answer: RNA Seq using Lrt

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