Showing : dnacopy • reset
0
votes
11
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1.9k
views
Create `Copy Number Array' Data Object error
DNAcopy
4.3 years ago El • 0
0
votes
8
replies
2.4k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
17.5 years ago jhs1jjm@leeds.ac.uk ▴ 230
0
votes
5
replies
2.0k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 70
2
votes
4
replies
2.8k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 9.1 years ago by ▴ 170 • written 9.1 years ago by • 0
0
votes
4
replies
1.7k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 17.5 years ago by ▴ 230 • written 17.5 years ago by ▴ 110
0
votes
4
replies
2.1k
views
DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 10.7 years ago by ★ 6.8k • written 10.7 years ago by ▴ 30
0
votes
4
replies
1.5k
views
Removing libraries or using a particular function
Cancer DNAcopy Cancer DNAcopy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 1.9k
2
votes
3
replies
1.8k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
0
votes
3
replies
1.6k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ★ 3.0k
0
votes
3
replies
4.0k
views
Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 80
0
votes
3
replies
1.6k
views
CGH DNAcopy plot multiple samples on one plot
Cancer DNAcopy Cancer DNAcopy
updated 17.4 years ago by ▴ 50 • written 17.4 years ago by ★ 1.9k
0
votes
3
replies
1.8k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
7.6 years ago Alexandre Kuhn ▴ 20
0
votes
3
replies
2.0k
views
"genomdat must be numeric"error in DNAcopy Package (Solved)
DNAcopy Varscan
updated 4.3 years ago by • 0 • written 7.1 years ago by • 0
0
votes
3
replies
1.9k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 7.7 years ago by ▴ 130 • written 7.7 years ago by • 0
0
votes
2
replies
1.4k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 17.5 years ago by ▴ 40 • written 17.5 years ago by ▴ 110
0
votes
2
replies
1.9k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 110
1
vote
2
replies
1.6k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 8.1 years ago by ▴ 30 • written 8.1 years ago by ▴ 10
0
votes
2
replies
1.4k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 280
0
votes
2
replies
1.6k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
13.8 years ago nac ▴ 280
0
votes
2
replies
1.4k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 16.8 years ago by ★ 2.4k • written 16.8 years ago by ★ 1.9k
0
votes
2
replies
1.4k
views
could not find function "DNAcopy"
dnacopy
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
0
votes
2
replies
1.3k
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 20
0
votes
1
reply
1.9k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 11.8 years ago by ▴ 40 • written 11.8 years ago by ★ 13k
0
votes
1
reply
1.0k
views
cghMCR bug?
Cancer DNAcopy cghMCR Cancer DNAcopy cghMCR
updated 18.2 years ago by ★ 2.9k • written 18.2 years ago by ★ 1.1k
1
vote
1
reply
1.4k
views
Installation of DNAcopy was absolutly done in R2.15?
installation dnacopy
10.3 years ago vov-x • 0
0
votes
1
reply
1.5k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
0
votes
1
reply
1.7k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 9.3 years ago by • 0 • written 9.3 years ago by ▴ 40
0
votes
1
reply
2.9k
views
change plot title in DNAcopy multiple plot.type="s"
DNAcopy
updated 7.4 years ago by ▴ 690 • written 7.4 years ago by ▴ 60
0
votes
1
reply
1.7k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
13.0 years ago Ekta Jain ▴ 370
0
votes
1
reply
1.2k
views
DNAcopy installation error
DNAcopy DNAcopy
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 10
0
votes
1
reply
1.4k
views
DNAcopy plot just one sample
Cancer DNAcopy Cancer DNAcopy
updated 17.6 years ago by 25k • written 17.6 years ago by ★ 1.9k
0
votes
1
reply
2.7k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 3.4 years ago by ★ 6.6k • written 3.4 years ago by • 0
0
votes
1
reply
1.3k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 230
0
votes
1
reply
1.1k
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 280
2
votes
1
reply
1.8k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 140
0
votes
1
reply
1.2k
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 13.8 years ago by ▴ 40 • written 13.8 years ago by ★ 1.6k
0
votes
1
reply
1.6k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 13.5 years ago by ▴ 20 • written 13.5 years ago by ▴ 580
0
votes
1
reply
1.5k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 280
0
votes
1
reply
1.4k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 370
0
votes
1
reply
1.6k
views
Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 12.2 years ago by ▴ 210 • written 12.2 years ago by ★ 13k
0
votes
0
replies
308
views
DNAcopy segment function not reproducible even when setting seed
DNAcopy
12 months ago BID • 0
0
votes
0
replies
1.2k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
20.0 years ago Yi, Andrew ▴ 20
0
votes
0
replies
1.0k
views
Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
17.7 years ago Daniel Brewer ★ 1.9k
0
votes
0
replies
914
views
how to get fewer cut points with DNAcopy or GLAD
SNP affy DNAcopy GLAD SNP affy DNAcopy GLAD
17.6 years ago Wittner, Ben ▴ 290
0
votes
0
replies
1.1k
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
15.2 years ago Anguraj Sadanandam ▴ 10
0
votes
0
replies
1.3k
views
DNAcopy segments.p function / Scoring CNVs
affy DNAcopy affy DNAcopy
16.6 years ago marco zucchelli ▴ 320
0
votes
0
replies
1.3k
views
cghMCR package - Jianhua Zhang
DNAcopy cghMCR DNAcopy cghMCR
15.2 years ago Luz G Alonso ▴ 20
0
votes
0
replies
1.3k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.2 years ago Daniel Rico ▴ 110
0
votes
0
replies
985
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
13.9 years ago Chiho Kwon ▴ 10
0
votes
0
replies
916
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
13.9 years ago nac ▴ 280
50 results • Page 1 of 1
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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
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Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
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