Showing : dnacopy • reset
2
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4
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2.8k
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Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 9.1 years ago by ▴ 170 • written 9.1 years ago by • 0
2
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3
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1.8k
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Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
2
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1
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1.8k
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DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 140
1
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2
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1.6k
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DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 8.1 years ago by ▴ 30 • written 8.1 years ago by ▴ 10
1
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1
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1.4k
views
Installation of DNAcopy was absolutly done in R2.15?
installation dnacopy
10.3 years ago vov-x • 0
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0
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1.0k
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Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
17.7 years ago Daniel Brewer ★ 1.9k
0
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4
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1.5k
views
Removing libraries or using a particular function
Cancer DNAcopy Cancer DNAcopy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 1.9k
0
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0
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914
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how to get fewer cut points with DNAcopy or GLAD
SNP affy DNAcopy GLAD SNP affy DNAcopy GLAD
17.6 years ago Wittner, Ben ▴ 290
0
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1
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1.4k
views
DNAcopy plot just one sample
Cancer DNAcopy Cancer DNAcopy
updated 17.6 years ago by 25k • written 17.6 years ago by ★ 1.9k
0
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1
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1.3k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 230
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2
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1.4k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 17.5 years ago by ▴ 40 • written 17.5 years ago by ▴ 110
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4
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1.7k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 17.5 years ago by ▴ 230 • written 17.5 years ago by ▴ 110
0
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8
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2.4k
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segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
17.5 years ago jhs1jjm@leeds.ac.uk ▴ 230
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3
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1.6k
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CGH DNAcopy plot multiple samples on one plot
Cancer DNAcopy Cancer DNAcopy
updated 17.4 years ago by ▴ 50 • written 17.4 years ago by ★ 1.9k
0
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2
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1.4k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 16.8 years ago by ★ 2.4k • written 16.8 years ago by ★ 1.9k
0
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0
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1.1k
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DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
15.2 years ago Anguraj Sadanandam ▴ 10
0
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0
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1.3k
views
DNAcopy segments.p function / Scoring CNVs
affy DNAcopy affy DNAcopy
16.6 years ago marco zucchelli ▴ 320
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2
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1.3k
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 15.2 years ago by 21k • written 15.2 years ago by ▴ 20
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0
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1.3k
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cghMCR package - Jianhua Zhang
DNAcopy cghMCR DNAcopy cghMCR
15.2 years ago Luz G Alonso ▴ 20
0
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0
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1.3k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.2 years ago Daniel Rico ▴ 110
0
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1
reply
1.2k
views
DNAcopy installation error
DNAcopy DNAcopy
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 10
0
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0
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986
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
13.9 years ago Chiho Kwon ▴ 10
0
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0
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917
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
13.9 years ago nac ▴ 280
0
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1
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1.1k
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 280
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2
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1.6k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
13.8 years ago nac ▴ 280
0
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1
reply
1.2k
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 13.8 years ago by ▴ 40 • written 13.8 years ago by ★ 1.6k
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1
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1.6k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 13.5 years ago by ▴ 20 • written 13.5 years ago by ▴ 580
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2
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1.9k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 110
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0
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1.2k
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Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
13.3 years ago nac ▴ 280
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0
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1.1k
views
seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
13.3 years ago nac ▴ 280
0
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0
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1.2k
views
Fwd: seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
13.3 years ago nac ▴ 280
0
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2
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1.4k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 280
0
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1
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1.5k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 280
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0
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1.2k
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aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
13.1 years ago Emilie Lalonde ▴ 10
0
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1
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1.4k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 370
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5
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2.0k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ▴ 70
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1
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1.6k
views
Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 12.2 years ago by ▴ 210 • written 12.2 years ago by ★ 13k
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3
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1.6k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ★ 3.0k
0
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1
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1.9k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 11.8 years ago by ▴ 40 • written 11.8 years ago by ★ 13k
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0
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1.4k
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readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
11.7 years ago Guest User ★ 13k
0
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0
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1.4k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
11.6 years ago Guest User ★ 13k
0
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0
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1.2k
views
DNA Copy CNA function , what do you pass to maploc argument?
DNAcopy DNAcopy
10.7 years ago Nikolas Balanis ▴ 30
0
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4
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2.1k
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DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 10.7 years ago by ★ 6.8k • written 10.7 years ago by ▴ 30
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0
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1.6k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
10.2 years ago giovanni.dario • 0
0
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1
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1.5k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
0
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0
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1.1k
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
9.6 years ago Cian Murphy ▴ 40
0
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1
reply
1.7k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 9.3 years ago by • 0 • written 9.3 years ago by ▴ 40
0
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2
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1.4k
views
could not find function "DNAcopy"
dnacopy
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
0
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3
replies
1.9k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 7.7 years ago by ▴ 130 • written 7.7 years ago by • 0
0
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3
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1.8k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
7.6 years ago Alexandre Kuhn ▴ 20
50 results • Page 1 of 1
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Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Votes
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
Comment: Error in retrieving clinical data
What is the cheapest day to fly on American Airlines? {Ask_Expert}
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