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dnastringset
•
reset
1
vote
5
replies
4.2k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
8.9 years ago
dan.gatti
• 0
3
votes
8
replies
1.7k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.4 years ago
TimothéeFlutre
▴ 80
6
votes
6
replies
5.0k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
XIA.PAN
▴ 20
0
votes
2
replies
816
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.1 years ago
XIA.PAN
▴ 20
3
votes
4
replies
3.6k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
vinod.acear
▴ 50
15
votes
2
replies
17k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
komal.rathi
▴ 120
2
votes
1
reply
772
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.4 years ago
s.ghignone
▴ 10
0
votes
3
replies
1.1k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
vinod.acear
▴ 50
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.0 years ago by
Robert Stojnic
▴ 50 • written 8.0 years ago by
sekawaiwai2006
▴ 20
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
TimothéeFlutre
▴ 80
2
votes
5
replies
4.3k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.8 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.3 years ago
ben.ward
▴ 30
12 results • Page
1 of 1
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by
mercedeh.movassagh
▴ 10
Yes that is correct
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
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by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
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DESeq2 normalization vs VST vs rlog
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Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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