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dnastringset
•
reset
2
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774
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.4 years ago
s.ghignone
▴ 10
3
votes
4
replies
3.6k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
vinod.acear
▴ 50
2
votes
5
replies
4.3k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
0
votes
2
replies
816
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.1 years ago
XIA.PAN
▴ 20
6
votes
6
replies
5.0k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.0 years ago by
Robert Stojnic
▴ 50 • written 8.0 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.3 years ago
ben.ward
▴ 30
0
votes
3
replies
1.1k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
vinod.acear
▴ 50
15
votes
2
replies
17k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
komal.rathi
▴ 120
3
votes
8
replies
1.7k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.4 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.2k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
8.9 years ago
dan.gatti
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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