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dnastringset
•
reset
1
vote
5
replies
4.2k
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Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
8.9 years ago
dan.gatti
• 0
3
votes
8
replies
1.7k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.4 years ago
TimothéeFlutre
▴ 80
6
votes
6
replies
5.0k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
XIA.PAN
▴ 20
0
votes
2
replies
816
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.1 years ago
XIA.PAN
▴ 20
3
votes
4
replies
3.6k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
vinod.acear
▴ 50
15
votes
2
replies
17k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
komal.rathi
▴ 120
2
votes
1
reply
774
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.4 years ago
s.ghignone
▴ 10
0
votes
3
replies
1.1k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
vinod.acear
▴ 50
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.0 years ago by
Robert Stojnic
▴ 50 • written 8.0 years ago by
sekawaiwai2006
▴ 20
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
TimothéeFlutre
▴ 80
2
votes
5
replies
4.3k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.3 years ago
ben.ward
▴ 30
12 results • Page
1 of 1
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Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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