Showing : dnastringset • reset
2
votes
1
reply
372
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset dnastringsetlist seqnames
3.5 years ago s.ghignone ▴ 10
3
votes
4
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2.7k
views
How to convert a DnaStringSet object to list of seq?
dnastringset list stringset
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 50
2
votes
5
replies
3.0k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq Xvector dnastringset
updated 5.0 years ago by 15k • written 5.0 years ago by • 0
0
votes
2
replies
513
views
how to deal with multiple barcodes/index in the analysis
dnastringset aastringset
5.2 years ago XIA.PAN ▴ 20
5
votes
6
replies
2.6k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 5.2 years ago by 15k • written 5.2 years ago by ▴ 20
3
votes
1
reply
3.8k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset getseq
updated 5.8 years ago by 15k • written 5.8 years ago by ▴ 80
2
votes
3
replies
1.1k
views
visualing pwm motif on a DNAstring
pwmenrich dnastringset
updated 6.1 years ago by ▴ 50 • written 6.2 years ago by ▴ 20
0
votes
4
replies
969
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset parallel iterators
6.4 years ago ben.ward ▴ 30
0
votes
3
replies
642
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet sample
updated 6.5 years ago by 15k • written 6.5 years ago by ▴ 50
14
votes
2
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13k
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Extract sequence from DNAStringSet object
dnastringset
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 100
3
votes
8
replies
969
views
problem with @ranges@start in DNAStringSet
vcf testthat dnastringset
6.5 years ago TimothéeFlutre ▴ 80
1
vote
5
replies
3.2k
views
Converting a DNAStringSetList to characters quickly
readVcf DNAStringSet DNAStringSetList variantannotation readvcf
7.1 years ago dan.gatti • 0
12 results • Page 1 of 1
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Comment: featureCounts: 0% successfully assigned fragments by KMS • 0
Dear ATpoint I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene by James W. MacDonald 59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
Comment: Handling of missing values in limma by AyHi • 0
Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files by lesefo6448 • 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Comment: featureCounts: 0% successfully assigned fragments by ATpoint ★ 1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
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Scholar to James W. MacDonald 59k
Popular Question to Gyan Prakash Mishra • 0
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Teacher to Gordon Smyth 45k
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