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dnastringset
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2
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784
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DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.5 years ago
s.ghignone
▴ 10
3
votes
4
replies
3.7k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
vinod.acear
▴ 50
2
votes
5
replies
4.4k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Sophie
• 0
0
votes
2
replies
828
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.1 years ago
XIA.PAN
▴ 20
6
votes
6
replies
5.1k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
XIA.PAN
▴ 20
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.1 years ago by
Robert Stojnic
▴ 50 • written 8.1 years ago by
sekawaiwai2006
▴ 20
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.4 years ago
ben.ward
▴ 30
0
votes
3
replies
1.1k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
vinod.acear
▴ 50
15
votes
2
replies
17k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
komal.rathi
▴ 120
3
votes
8
replies
1.7k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.5 years ago
TimothéeFlutre
▴ 80
1
vote
5
replies
4.3k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
9.0 years ago
dan.gatti
• 0
12 results • Page
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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
by
christianhilton64
• 0
I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
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Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
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shepherl
3.8k
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Gordon Smyth
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