Showing : dose • reset
4
votes
4
replies
4.1k
views
Clarifications on p-values in enrichResult objects
clusterProfiler reactomepa dose
updated 18 months ago by • 0 • written 7.6 years ago by ▴ 660
4
votes
3
replies
1.8k
views
BiocParallel: object export issue
BiocParallel DOSE
updated 7.5 years ago by 25k • written 7.5 years ago by ★ 3.9k
2
votes
2
replies
3.4k
views
enrichGO from DOSE, clusterprofiler is returning empty result.
DOSE clusterprofiler annotation gene ontology gene set enrichment
updated 6.4 years ago by ★ 1.2k • written 6.4 years ago by ▴ 10
2
votes
6
replies
3.1k
views
leading edge analysis clusterProfiler DOSE custom GSEA
clusterprofiler DOSE GSEA_internal USER_DATA leading edge Analysis
7.5 years ago Riba Michela ▴ 90
2
votes
5
replies
1.8k
views
Need help setting up DESeq2 complex model for multi-dose experiment
deseq2 multiple time points dose
updated 7.2 years ago by 41k • written 7.2 years ago by • 0
1
vote
4
replies
3.1k
views
gseDO function input
DOSE clusterprofiler
updated 6.7 years ago by ★ 1.2k • written 6.7 years ago by • 0
1
vote
1
reply
1.5k
views
Treatment dose in treatment-control RNA-seq
deseq2 edger dose rna-seq
updated 8.5 years ago by ★ 28k • written 8.5 years ago by • 0
1
vote
2
replies
5.4k
views
ClusterProfiler DotPlot Vs Ridgeplot
clusterProfiler DOSE
updated 16 months ago by • 0 • written 19 months ago by • 0
1
vote
3
replies
1.6k
views
Subset of genes can find a term but whole set cannot
biomart dose
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
1
vote
2
replies
2.4k
views
Regression using LIMMA
affy limma DOSE affy limma DOSE
updated 13.4 years ago by ★ 6.0k • written 13.4 years ago by ▴ 380
1
vote
1
reply
1.2k
views
dotplot in DOSE
compilation error DOSE
6.0 years ago alper.kucukural ▴ 10
1
vote
1
reply
1.6k
views
ReactomePA viewPathway DE node and legend colour
DOSE ReactomePA
7.3 years ago Kajus Baidžajevas ▴ 10
0
votes
0
replies
1.2k
views
robust linear model in anovas
DOSE DOSE
20.0 years ago Arne.Muller@aventis.com ▴ 620
0
votes
1
reply
986
views
programming problem: running many ANOVAs
DOSE DOSE
updated 20.0 years ago by ▴ 130 • written 20.0 years ago by ▴ 620
0
votes
0
replies
790
views
A single linear model for all
DOSE DOSE
20.0 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.1k
views
Re: Classification question(Tom R. Fahland)
Classification DOSE Classification DOSE
20.0 years ago Stephen Henderson ★ 1.0k
0
votes
0
replies
984
views
Probe level analysis
probe limma DOSE probe limma DOSE
20.0 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.4k
views
Anova with ratios
affy DOSE affy DOSE
19.9 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.1k
views
Friedman test
DOSE DOSE
19.6 years ago Arne.Muller@aventis.com ▴ 620
0
votes
1
reply
1.2k
views
unbalanced design
limma DOSE limma DOSE
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 620
0
votes
1
reply
1.2k
views
normalizaton between studies
Normalization vsn DOSE Normalization vsn DOSE
updated 19.4 years ago by ▴ 10 • written 19.4 years ago by ▴ 620
0
votes
1
reply
2.1k
views
Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 19.3 years ago by ▴ 360 • written 19.3 years ago by ▴ 620
0
votes
0
replies
1.6k
views
RMA normalization,which samples should be normalized together
Normalization probe affy limma gcrma DOSE Normalization probe affy limma gcrma DOSE
19.2 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
1
reply
1.5k
views
Re: Limma: M value in toptable
limma DOSE limma DOSE
updated 19.2 years ago by ▴ 60 • written 19.2 years ago by 50k
0
votes
4
replies
1.4k
views
microarray analysis of a dose response * strain experiment
affy DOSE BRAIN affy DOSE BRAIN
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 890
0
votes
0
replies
1.1k
views
microarray analysis of a dose response * strain experiment
Microarray affy limma maSigPro DOSE BRAIN Microarray affy limma maSigPro DOSE BRAIN
17.5 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
1.1k
views
about microarray batch effect and treatment effect
affy DOSE affy DOSE
16.3 years ago Aedin Culhane ▴ 510
0
votes
0
replies
1.2k
views
Expired Illumina expression chip - advice for use and experimental design
GO limma DOSE GO limma DOSE
16.2 years ago Johnstone, Alice ▴ 410
0
votes
5
replies
3.0k
views
Finding genes with significant linear regression or trend
Microarray Regression Cancer limma DOSE Microarray Regression Cancer limma DOSE
updated 15.9 years ago by ▴ 340 • written 15.9 years ago by ★ 1.9k
0
votes
4
replies
1.6k
views
GEO annotation
Annotation DOSE Annotation DOSE
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 110
0
votes
9
replies
4.5k
views
GEOquery installation problem
DOSE DOSE
14.7 years ago zhihua zhang ▴ 50
0
votes
1
reply
1.2k
views
limma: writing down the matrix in an almost (?) factorial design experiment
Microarray DOSE Microarray DOSE
14.2 years ago Massimo Pinto ▴ 390
0
votes
2
replies
1.7k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 13.4 years ago by ★ 4.3k • written 13.4 years ago by ▴ 120
0
votes
1
reply
1.5k
views
LIMMA: donor effect
Microarray limma DOSE Microarray limma DOSE
updated 13.0 years ago by ▴ 380 • written 13.0 years ago by 50k
0
votes
2
replies
1.3k
views
about limma linear models
Microarray limma DOSE Microarray limma DOSE
updated 12.9 years ago by ▴ 40 • written 12.9 years ago by 50k
0
votes
0
replies
1.1k
views
Identifying expression trends in RNA-seq experiment - through edgeR
edgeR DOSE edgeR DOSE
10.8 years ago Sandhya Pemmasani Kiran ▴ 40
0
votes
3
replies
1.8k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO clusterProfiler DOSE GO clusterProfiler DOSE
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ★ 13k
0
votes
0
replies
1.4k
views
Error in clusterProfiler package with function \"setReadable<-\"
GO Cancer Rgraphviz clusterProfiler DOSE GO Cancer Rgraphviz clusterProfiler DOSE
10.8 years ago Martin Morgan 25k
0
votes
0
replies
916
views
Re: Classification question(Tom R. Fahland)
Classification DOSE Classification DOSE
20.0 years ago Tarca Adi Laurentiu ▴ 100
0
votes
2
replies
1.8k
views
question about design for limma time course, 2 conditions and drug treatment microarray experiment
Microarray DOSE Microarray DOSE
updated 10.4 years ago by ▴ 190 • written 10.4 years ago by ★ 13k
0
votes
1
reply
1.4k
views
strange log2FoldChange estimates
RNASeq DOSE DESeq2 RNASeq DOSE DESeq2
9.7 years ago Shi, Tao ▴ 720
0
votes
0
replies
1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
9.4 years ago Guangchuang Yu ★ 1.2k
0
votes
0
replies
2.6k
views
Modifying the legend in cnetplot function
clusterProfiler DOSE
8.4 years ago Vinicius Henrique da Silva ▴ 40
0
votes
3
replies
1.2k
views
Failed to install 'DOSE' package. Win10, 'single candle'
DOSE package installation windows10
6.8 years ago Yisong Zhen ▴ 200
0
votes
2
replies
1.5k
views
Reference for edge and node properties suitable for enrichMap{DOSE}
DOSE ReactomePA enrichMap enrichPathway
updated 6.2 years ago by ★ 1.2k • written 6.2 years ago by • 0
0
votes
1
reply
978
views
How to change the siez of lables in heatmap
software error go dose heatplot gseGo
5.2 years ago aboumarshal • 0
0
votes
0
replies
1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
0
votes
1
reply
724
views
Disease semantic similarity
DOSE
5.0 years ago ahmettoprak42 • 0
0
votes
2
replies
2.0k
views
DO.db is missing after repeated installations-ReactomePA-ClusterProfiler-DOSE
software error reactomePA DOSE DO.db there is no package called ‘DO.db’
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
0
votes
0
replies
747
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
Popular Question to sropri • 0
Locations • All
France, 10 minutes ago
Egypt, 15 minutes ago
Canada, 16 minutes ago
India, 21 minutes ago
Iran, 23 minutes ago
Traffic: 740 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6