Bioconductor Dplyr

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AnnotationHub dplyr

updated 21 months ago by SmallChess ▴ 10 • written 3.5 years ago by georgia.katsoula ▴ 40

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r granges dplyr error handling

updated 7.5 years ago by Mike Smith ★ 6.5k • written 7.5 years ago by Jurat Shahidin ▴ 80

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1.7k

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GenomicRanges S4Vectors dplyr

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by liz.ingsimmons ▴ 140

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dplyr tidyr

updated 3.7 years ago by Martin Morgan 25k • written 3.7 years ago by Marco Blanchette ▴ 30

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bioconductor dplyr select

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by abedini.jaleh ▴ 10

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dplyr IsoformSwitchAnalyzeR

written 12 months ago by ramon.dslps • 0

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tcgabiolinks dplyr DT

5.6 years ago Mithil Gaikwad • 0

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exprs dplyr Biobase

5.9 years ago Wolfgang Huber ★ 13k

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427

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dplyr TreeSummarizedExperiment

updated 7 months ago by Michael Love 41k • written 7 months ago by question_guy • 0

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biocparallel curatedmetagenomicdata parallel dplyr

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by Lucas Schiffer ▴ 240

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geometadb dplyr Tutorial

8.9 years ago Sean Davis 21k

11 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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