Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
drimseq
•
reset
0
votes
11
replies
882
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
3.1 years ago
saddamhusain77
• 0
2
votes
9
replies
913
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 3.9 years ago by
Koen Van den Berge
▴ 180 • written 3.9 years ago by
fiona.dick91
▴ 10
0
votes
5
replies
284
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
9 months ago
bioinformatic_trainee
• 0
0
votes
5
replies
400
views
DRIMSeq with technical replicates
DRIMSeq
R
DTU
technical replicates
deseq2
updated 22 months ago by
Kevin Blighe
3.5k • written 22 months ago by
poecile.pal
• 0
0
votes
5
replies
604
views
Error using DRIMSeq with Salmon count data
DRIMSeq
tximport
txdb
Salmon
updated 21 months ago by
Michael Love
37k • written 21 months ago by
Charlotte
• 0
0
votes
4
replies
165
views
DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
DEXSeq
DRIMSeq
updated 1 day ago by
jeroen.gilis
▴ 30 • written 25 days ago by
phoebe1354
• 0
3
votes
4
replies
381
views
DRIMSeq: many NAs in results compared to DESeq2 ?
DESeq2
DRIMSeq
dtu
RNASeq
10 months ago
sbcn
▴ 70
2
votes
4
replies
889
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
3.3 years ago
d-joester
▴ 20
4
votes
3
replies
704
views
DEXSeq and DRIMSeq on paired samples?
DRIMSeq
DEXSeq
updated 3.7 years ago by
Gosia Nowicka
▴ 90 • written 3.7 years ago by
zoe.ward
• 0
0
votes
3
replies
607
views
DRIMSeq continious variable in design matrix - Error during precision estimation
DRIMSeq
dmPrecision
3.3 years ago
fiona.dick91
▴ 10
0
votes
3
replies
533
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 3.5 years ago by
Michael Love
37k • written 3.5 years ago by
Jack.Hearn
• 0
0
votes
2
replies
336
views
DRIMSeq + dmFilter
DEXSeq
DRIMSeq
14 months ago
Gaia
• 0
1
vote
2
replies
993
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 5.3 years ago by
Gosia Nowicka
▴ 90 • written 5.3 years ago by
kristoffer.vittingseerup
▴ 20
1
vote
2
replies
676
views
Normalized transcript/exon counts for network analysis
drimseq
dexseq
wgcna
sva
updated 3.3 years ago by
Gosia Nowicka
▴ 90 • written 3.3 years ago by
maya.kappil
▴ 20
2
votes
2
replies
604
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
fiona.dick91
▴ 10
1
vote
1
reply
330
views
DEXSeq-DTU normalisation suggestion - scaledTPM vs dtuScaledTPM
tximport
DEXSeq-DTU
DRIMSeq
updated 23 months ago by
Michael Love
37k • written 23 months ago by
aleksandar.baburski.g
• 0
0
votes
1
reply
378
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 3.2 years ago by
Koen Van den Berge
▴ 180 • written 3.2 years ago by
sdvie
• 0
1
vote
1
reply
368
views
Calling a package specific function in a for loop
drimseq
swimming downstream
for loop
sapply
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
georgewwp
• 0
1
vote
1
reply
328
views
Error in dmTest() from DRIMSeq package - tuQTL
DRIMSeq
tuQTL
updated 22 months ago by
Gosia Nowicka
▴ 90 • written 22 months ago by
iaradsouza1
• 0
1
vote
1
reply
911
views
DrimSeq: installation versions
drimseq
DTU
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
somseeprags
▴ 10
0
votes
0
replies
213
views
Subset samples expressing genes for DEXSeq or DRIMSeq analysis
DEXSeq
DRIMSeq
2.0 years ago
alexis.weinreb
• 0
0
votes
0
replies
261
views
Error generating counts df for use with DRIMSeq/DEXseq
DRIMSeq
DEXSeq
13 months ago
jbono
▴ 10
22 results • Page
1 of 1
Recent ...
Replies
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
priyanka.m
• 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values
by
wahaha
• 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences
by
Nicole
• 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Comment: Rsamtools is not available for (for R version 4.0.2)
by
olinares-perdomo
• 0
I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Awards
• All
Scholar
to
Nicole
• 0
Teacher
to
Michael Love
37k
Popular Question
to
svlachavas
▴ 780
Popular Question
to
Gordon Smyth
45k
Scholar
to
Rory Stark
★ 4.4k
Locations
• All
Switzerland,
49 minutes ago
Belgium,
1 hour ago
Switzerland,
1 hour ago
United Kingdom,
1 hour ago
India,
1 hour ago
Traffic: 189 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6