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10
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shbrief
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21 months ago • updated 20 months ago
Peter Hickey
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740
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updated 5.1 years ago by
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28k
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Matthew Thornton
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350
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170
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15 months ago
fdumetz
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0
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1.5k
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28k
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written 4.1 years ago by
gil.stelzer
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6
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2.9 years ago
wesselyf
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0
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5.1 years ago • updated 5.0 years ago
Matthew Thornton
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350
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updated 3.2 years ago by
Aaron Lun
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written 3.2 years ago by
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740
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1.1k
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1.0k
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updated 3.3 years ago by
Aaron Lun
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740
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1
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2
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997
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rohitsatyam102
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20
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0
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1
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958
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updated 24 months ago by
rohitsatyam102
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written 2.2 years ago by
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0
3
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2
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949
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8
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10
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0
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1
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825
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hamza_karakurt
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50
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1
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664
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4.0k
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1.5k
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3
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655
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0
1
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642
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updated 2.3 years ago by
Aaron Lun
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28k
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written 2.3 years ago by
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270
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Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★
4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
•
0
Thank you for your comment!
1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right?
Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★
28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★
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This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
•
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I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
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