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Answer: WGCNA correlation sign differences between eigen genes/ hub genes and clinical t by Vanatta • 0
It is possible that the hub genes are not directly related to the immune score but are instead related to other factors that are negatively…
Comment: SingleR annotation of several slots/patients by Bine ▴ 20
Thank you for your comment & help. When I try to run it with clusters it complains about having multiple layers: GetAssayData(kid.filt…
Answer: SingleR annotation of several slots/patients by ATpoint ★ 3.6k
SingleR is agnostic. It does not know "patients" or "groups". You can either annotate each cell individually and then map this back to your…
Comment: How to get DMR for Infinium methylation EPIC v2 by rae.alshammari • 0
Thank you James for your insight, I did this step earlier in the beginning of the analysis, but I am encountering a challenge when specifyi…
Comment: DuplicateCorrelation() block by duplicate sample or by cell line ? by Gordon Smyth 49k
They are not technical replicates. With the `Exposure+CellLine` model, your experiment has only one level of variability so there is no pos…
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Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
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