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dss
•
reset
3
votes
0
replies
673
views
DSS : Different results between DMLtest and DMLtest.multifactor
DSS
2.6 years ago
cer.chloe
▴ 30
2
votes
4
replies
2.0k
views
Error: could not find function "DMLtest"
dss
8.0 years ago
kafkaskid
▴ 20
2
votes
4
replies
1.2k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis
illuminaio
beadarray
DSS
bsseqData
2.1 years ago
Jojo
• 0
1
vote
1
reply
1.2k
views
Using surrogate variables as covariates in WGBS differential methylation calling
dmrseq
sva
DSS
updated 4.8 years ago by
keegan
▴ 60 • written 4.8 years ago by
gjl
▴ 10
1
vote
2
replies
1.0k
views
BUG: `showOneDMR` from DSS package creates wrong axis labels
DSS
3.3 years ago
vi.hammer
• 0
1
vote
1
reply
171
views
Question about correction of confounders for EWAS
dss
DSS
updated 8 weeks ago by
James W. MacDonald
65k • written 8 weeks ago by
chuanjiao6
• 0
0
votes
0
replies
840
views
DSS DMLtest Object features
DSS
DMLtest
6.0 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.1k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.0 years ago
floriandeckert
▴ 30
0
votes
6
replies
1.5k
views
limma complex contrast matrix
DSS
DSS
updated 13.0 years ago by
Ina Hoeschele
▴ 620 • written 13.0 years ago by
Prasad Siddavatam
▴ 150
0
votes
1
reply
683
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
varunorama
• 0
0
votes
0
replies
841
views
[DSS] callDMR - dis.merge option does not seem to be working
DSS
bug
troubleshooting
callDMR
4.3 years ago
matthew.kearney
• 0
0
votes
0
replies
687
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
4.0 years ago
stephanie.rialle
• 0
0
votes
7
replies
2.5k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
updated 17 months ago by
James W. MacDonald
65k • written 22 months ago by
16301050225
• 0
0
votes
1
reply
919
views
DMRfinder findDMRs.r Error - Argument is of length zero
DSS
DMRcaller
updated 10 months ago by
Noelia
• 0 • written 20 months ago by
Claire
• 0
0
votes
0
replies
445
views
Confusing DSS outputs with smoothing (DMLtest)
DSS
12 months ago
Weisheng
• 0
0
votes
0
replies
701
views
DSS for non-CpG site analysis
DSS
methylation
4.5 years ago
CalM
• 0
0
votes
3
replies
1.7k
views
QuasiSeq vs DSS
RNASeq
Cancer
edgeR
DSS
RNASeq
Cancer
edgeR
DSS
updated 11.1 years ago by
Ryan C. Thompson
★ 7.9k • written 11.1 years ago by
Richard Friedman
★ 2.0k
0
votes
1
reply
1.4k
views
limma design matrix missing a Date column
limma
DSS
limma
DSS
updated 10.1 years ago by
James W. MacDonald
65k • written 10.1 years ago by
Sabet, Julia A
▴ 180
0
votes
2
replies
2.1k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
8.6 years ago • updated 8.5 years ago
Tim Peters
▴ 160
0
votes
1
reply
1.0k
views
DSS DMLtest with different group sizes
DSS
7.6 years ago
aerval
• 0
0
votes
0
replies
1.2k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
6.5 years ago
floriandeckert
▴ 30
21 results • Page
1 of 1
Recent ...
Replies
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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