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dtu
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16
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25
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2.9k
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.0 years ago by
fiona.dick91
▴ 60
3
votes
9
replies
2.1k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
rbenel
▴ 40
1
vote
9
replies
1.9k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 4.8 years ago by
fruce_ki
▴ 20 • written 4.8 years ago by
UserAnonyme
• 0
2
votes
9
replies
1.7k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 5.8 years ago by
Koen Van den Berge
▴ 180 • written 5.8 years ago by
fiona.dick91
▴ 60
1
vote
6
replies
1.5k
views
Differential Transcript Usage: complex factorial design
edgeR
DEXSeq
IsoformSwitchAnalyzeR
DTU
updated 2.8 years ago by
k.vitting.seerup
▴ 120 • written 3.0 years ago by
jbono
▴ 10
1
vote
1
reply
1.3k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.0 years ago by
Michael Love
41k • written 5.3 years ago by
fiona.dick91
▴ 60
1
vote
1
reply
1.2k
views
DrimSeq: installation versions
drimseq
DTU
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
somseeprags
▴ 10
2
votes
2
replies
1.1k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
fiona.dick91
▴ 60
3
votes
4
replies
1.1k
views
DRIMSeq: many NAs in results compared to DESeq2 ?
DESeq2
DRIMSeq
dtu
RNASeq
2.8 years ago
sbcn
▴ 80
1
vote
1
reply
1.1k
views
DTU using DEXSeq (time series data with condition factor)
DTU
DEXSeq
RNADTU
updated 2.2 years ago by
Alejandro Reyes
★ 1.9k • written 2.7 years ago by
Nirad
▴ 10
0
votes
5
replies
1.1k
views
DRIMSeq with technical replicates
DRIMSeq
R
DTU
technical replicates
deseq2
updated 3.7 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
poecile.pal
• 0
11 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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