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eBayes
•
reset
6
votes
4
replies
1.2k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
3.2 years ago
snijesh
▴ 20
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
irene.roman
• 0
0
votes
6
replies
1.7k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
1.4k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.2 years ago
darthratus
• 0
1
vote
2
replies
1.5k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
reventropy2003
▴ 10
0
votes
6
replies
2.1k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
6.5 years ago
peirinl
• 0
1
vote
3
replies
1.6k
views
Error from eBayes in limma package
eBayes
limma
error
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.5k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.2 years ago
bag59
• 0
4
votes
2
replies
1.9k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 12 months ago by
Gordon Smyth
50k • written 7.3 years ago by
cemcdono
• 0
1
vote
1
reply
915
views
Limma ebayes function error without any messages
limma
ebayes
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
bharata1803
▴ 60
3
votes
3
replies
1.7k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
ssrajan86
• 0
0
votes
1
reply
1.3k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
Vani
▴ 20
6
votes
5
replies
1.8k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
Paulo Nuin
▴ 200
14 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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