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eBayes
•
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0
votes
6
replies
2.1k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
6.5 years ago
peirinl
• 0
4
votes
2
replies
1.9k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 11 months ago by
Gordon Smyth
50k • written 7.2 years ago by
cemcdono
• 0
6
votes
5
replies
1.8k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
Paulo Nuin
▴ 200
3
votes
3
replies
1.7k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 8.6 years ago by
Gordon Smyth
50k • written 8.7 years ago by
ssrajan86
• 0
0
votes
6
replies
1.7k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.1 years ago by
Gordon Smyth
50k • written 5.1 years ago by
Sebastian Hesse
▴ 70
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.1 years ago
darthratus
• 0
1
vote
3
replies
1.6k
views
Error from eBayes in limma package
eBayes
limma
error
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
calen.p.ryan
• 0
1
vote
2
replies
1.4k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 6.4 years ago by
Gordon Smyth
50k • written 6.4 years ago by
reventropy2003
▴ 10
2
votes
2
replies
1.4k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.1 years ago
bag59
• 0
3
votes
1
reply
1.4k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
CantExitVIM
▴ 10
0
votes
1
reply
1.2k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
Vani
▴ 20
6
votes
4
replies
1.2k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
3.1 years ago
snijesh
▴ 20
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
irene.roman
• 0
1
vote
1
reply
898
views
Limma ebayes function error without any messages
limma
ebayes
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
bharata1803
▴ 60
14 results • Page
1 of 1
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Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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