Bioconductor ESet

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biobase expressionset eset

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by andrew.birnberg ▴ 20

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eset annotation

updated 9.8 years ago by Diego Diez ▴ 760 • written 9.8 years ago by Vani ▴ 20

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methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by martens.christopher • 0

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limma differential expression design matrix error eset

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Vani ▴ 20

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affy eset

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by AZ ▴ 30

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eset annotation

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by colonppg ▴ 30

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subsetting eSet

9.1 years ago Shamim Sarhadi ▴ 20

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biobase eSet expressionSet

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by Guido Hooiveld ★ 4.1k

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limma microarray eset

9.8 years ago Vani ▴ 20

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microarray affy eset

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by mathavanbioinfo ▴ 20

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limma eset error ebayes

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by Vani ▴ 20

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scan.upc eset

updated 9.7 years ago by Stephen Piccolo ▴ 600 • written 9.7 years ago by Jo ▴ 30

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Minfi eset

7.3 years ago SplittingInfinity ▴ 60

13 results • Page 1 of 1

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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k