Bioconductor ESet

Showing : eSet • reset

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2.3k

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biobase expressionset eset

updated 7.5 years ago by Martin Morgan 25k • written 7.5 years ago by andrew.birnberg ▴ 20

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1.9k

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subsetting eSet

9.9 years ago Shamim Sarhadi ▴ 20

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9.5k

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eset annotation

updated 10.6 years ago by Diego Diez ▴ 760 • written 10.6 years ago by Vani ▴ 20

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11k

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limma differential expression design matrix error eset

updated 10.5 years ago by Aaron Lun ★ 29k • written 10.5 years ago by Vani ▴ 20

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1.7k

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limma eset error ebayes

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by Vani ▴ 20

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1.6k

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scan.upc eset

updated 10.4 years ago by Stephen Piccolo ▴ 600 • written 10.4 years ago by Jo ▴ 30

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3.8k

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biobase eSet expressionSet

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by Guido Hooiveld ★ 4.1k

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12k

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microarray affy eset

updated 8.9 years ago by Gordon Smyth 53k • written 8.9 years ago by mathavanbioinfo ▴ 20

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1.8k

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affy eset

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by AZ ▴ 20

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5.0k

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methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 10.6 years ago by James W. MacDonald 68k • written 10.6 years ago by martens.christopher • 0

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3.2k

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eset annotation

updated 10.6 years ago by James W. MacDonald 68k • written 10.6 years ago by colonppg ▴ 30

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1.2k

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Minfi eset

8.0 years ago SplittingInfinity ▴ 60

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1.6k

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limma microarray eset

10.5 years ago Vani ▴ 20

13 results • Page 1 of 1

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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Popular Question to Lluís Revilla Sancho ▴ 760