Showing : edge • reset
1
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7
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1.6k
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.2 years ago • updated 6.2 years ago joe.d.moore.ii • 0
0
votes
2
replies
1.3k
views
edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 8.4 years ago by • 0 • written 8.5 years ago by • 0
0
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2
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1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 16 months ago by 50k • written 17 months ago by • 0
0
votes
2
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614
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
2
replies
854
views
Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 4.4 years ago by 50k • written 4.4 years ago by • 0
3
votes
2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 20
0
votes
0
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614
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Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.1 years ago emily • 0
0
votes
0
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591
views
Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
754
views
Fold Change Calculation in edge package
edge microarray limma affy
4.8 years ago soumyab.g ▴ 10
0
votes
0
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853
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
5.7 years ago rubi ▴ 110
1
vote
1
reply
639
views
export the significant results from EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
0
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0
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595
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static experiment in EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
12 results • Page 1 of 1
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Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Comment: minfi::read.metharray.exp by Basti ▴ 780
This is indeed correct now !
Comment: get BM error by Fara • 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error by Mike Smith ★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
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