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edge
•
reset
1
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7
replies
1.6k
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge
qpcr
qvalue
7.1 years ago • updated 6.2 years ago
joe.d.moore.ii
• 0
0
votes
2
replies
1.3k
views
edge, timeseries analysis, model specification question
edge
timecourse
fittimeseries
updated 8.4 years ago by
Andrew Bass
• 0 • written 8.5 years ago by
warren.anderson
• 0
0
votes
2
replies
1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR
edge
updated 16 months ago by
Gordon Smyth
50k • written 16 months ago by
Isa
• 0
0
votes
2
replies
611
views
Can EDGE analyse RNA-seq data?
edge
RNA-seq
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
xgt1986627
▴ 10
0
votes
2
replies
850
views
Longitudinal Time-Course microarray experiment with two time points
edge
DGE
microarray
updated 4.4 years ago by
Gordon Smyth
50k • written 4.4 years ago by
joanasabinopinto
• 0
3
votes
2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
Arne Muller
▴ 20
1
vote
1
reply
637
views
export the significant results from EDGE
microarray
edge
4.9 years ago
xgt1986627
▴ 10
0
votes
0
replies
607
views
Error in svd(X) when using edge lrt (or odp) function.
edge
Microarray
longitudinal
2.1 years ago
emily
• 0
0
votes
0
replies
590
views
Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago
xgt1986627
▴ 10
0
votes
0
replies
748
views
Fold Change Calculation in edge package
edge
microarray
limma
affy
4.8 years ago
soumyab.g
▴ 10
0
votes
0
replies
847
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge
differential gene expression
timecourse
interaction
5.7 years ago
rubi
▴ 110
0
votes
0
replies
593
views
static experiment in EDGE
microarray
edge
4.9 years ago
xgt1986627
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Hi, Thank you very much for your answer. It's true that I only used 6 samples for this analysis, which is consistent with your explanation…
Comment: Error using champ.import
by
shilpa
• 0
I'm having same issues too. Did anyone manage to resolve it?
Answer: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
You don't explain how many samples you have (columns of data), but the warning message shown in your post would arise if there are in fact …
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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