Bioconductor Edge

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edgeR edge

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Isa • 0

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edge Microarray longitudinal

2.1 years ago emily • 0

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edge DGE microarray

updated 4.4 years ago by Gordon Smyth 50k • written 4.4 years ago by joanasabinopinto • 0

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edge microarray limma affy

4.8 years ago soumyab.g ▴ 10

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edge

4.9 years ago xgt1986627 ▴ 10

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edge RNA-seq

updated 4.9 years ago by James W. MacDonald 65k • written 4.9 years ago by xgt1986627 ▴ 10

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microarray edge

4.9 years ago xgt1986627 ▴ 10

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microarray edge

4.9 years ago xgt1986627 ▴ 10

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edge differential gene expression timecourse interaction

5.7 years ago rubi ▴ 110

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edge qpcr qvalue

7.1 years ago • updated 6.2 years ago joe.d.moore.ii • 0

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edge timecourse fittimeseries

updated 8.4 years ago by Andrew Bass • 0 • written 8.5 years ago by warren.anderson • 0

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edge

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by Arne Muller ▴ 20

12 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

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Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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