Showing : edge • reset
1
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7
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EDGE: Persistent lrt() and odp() command pi0est() error due to low p values
edge qpcr qvalue
7.1 years ago • updated 6.2 years ago joe.d.moore.ii • 0
3
votes
2
replies
1.5k
views
MedIP-Seq: IP over Input with edgeR
edge
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 20
0
votes
2
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1.3k
views
edge, timeseries analysis, model specification question
edge timecourse fittimeseries
updated 8.4 years ago by • 0 • written 8.5 years ago by • 0
0
votes
2
replies
1.1k
views
Getting this error while trying to use edgeR "Error in as.vector(x, mode) : cannot coerce type 'closure' to vector of type 'any'"
edgeR edge
updated 16 months ago by 50k • written 16 months ago by • 0
0
votes
2
replies
850
views
Longitudinal Time-Course microarray experiment with two time points
edge DGE microarray
updated 4.4 years ago by 50k • written 4.4 years ago by • 0
0
votes
0
replies
847
views
Degrees of freedom and coefficients in an edge::deSet and edge::deFit objects
edge differential gene expression timecourse interaction
5.7 years ago rubi ▴ 110
0
votes
0
replies
748
views
Fold Change Calculation in edge package
edge microarray limma affy
4.8 years ago soumyab.g ▴ 10
1
vote
1
reply
638
views
export the significant results from EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
0
votes
2
replies
611
views
Can EDGE analyse RNA-seq data?
edge RNA-seq
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 10
0
votes
0
replies
609
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.1 years ago emily • 0
0
votes
0
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594
views
static experiment in EDGE
microarray edge
4.9 years ago xgt1986627 ▴ 10
0
votes
0
replies
591
views
Same results with static and time course analysis respectively in EDGE
edge
4.9 years ago xgt1986627 ▴ 10
12 results • Page 1 of 1
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
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