Bioconductor EdgeR

Showing : edgeR • reset

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edgeR

5 days ago • updated 16 hours ago Jonathan ▴ 10

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DGEList edgeR

4 days ago • updated 3 days ago prity6459 • 0

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113

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subsettingdata edgeR designmatrix

updated 3 days ago by Gordon Smyth 50k • written 4 days ago by prity6459 • 0

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100

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limma edgeR RNASeq

updated 3 days ago by Gordon Smyth 50k • written 5 days ago by Shaimaa Gamal • 0

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280

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rna-seq edgeR

updated 2 days ago by Gordon Smyth 50k • written 15 days ago by Netanel • 0

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1.5k

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salmon edgeR tximport nf-core gene_counts

updated 3 days ago by i.atanasoai • 0 • written 14 months ago by mohammedtoufiq91 ▴ 10

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7.8k

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deseq2 edgeR rna-seq

updated 4 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

7 results • Page 1 of 1

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Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

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Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Answer: Differentially expressed genes in monocle pseudotime

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Scholar to Gordon Smyth 50k