Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
edger
•
reset
9
votes
12
replies
7.7k
views
Multi factor design edgeR/Deseq2
deseq2
edgeR
rna-seq
updated 15 hours ago by
Elizabeth
• 0 • written 8.8 years ago by
gthm
▴ 30
6
votes
8
replies
1.5k
views
Which input file is used for DGEList in EgdeR?
salmon
edgeR
tximport
nf-core
gene_counts
updated 6 days ago by
i.atanasoai
• 0 • written 14 months ago by
mohammedtoufiq91
▴ 10
5
votes
3
replies
663
views
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
edgeR
DifferentialExpression
updated 22 days ago by
Gordon Smyth
50k • written 29 days ago by
Jack S.
▴ 50
5
votes
6
replies
374
views
Not fully paired differential gene expression analysis
edgeR
DifferentialExpression
updated 5 days ago by
ATpoint
★ 4.0k • written 9 days ago by
nhaus
▴ 30
3
votes
5
replies
324
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 19 days ago by
Gordon Smyth
50k • written 21 days ago by
Fabian
• 0
3
votes
3
replies
257
views
permutation test in edgeR
rna-seq
edgeR
updated 3 days ago by
Gordon Smyth
50k • written 10 days ago by
Netanel
• 0
1
vote
3
replies
218
views
Lib sizes in the DGE object are different from original lib sizes
edgeR
DifferentialExpression
updated 13 days ago by
James W. MacDonald
65k • written 13 days ago by
Shaimaa Gamal
• 0
1
vote
3
replies
301
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 3 days ago by
Gordon Smyth
50k • written 8 days ago by
Simran
• 0
0
votes
2
replies
1.1k
views
library size and fold changes
edgeR
edgeR
updated 19 days ago by
Gordon Smyth
50k • written 12.4 years ago by
Bogdan
▴ 670
0
votes
2
replies
138
views
edgeR analysis: glm functions and offset matrix
tximport
edgeR
Normalization
15 days ago
Marianna
▴ 20
0
votes
5
replies
1.8k
views
EdgeR: paired samples together with independant samples
RNASeq
edgeR
RNASeq
edgeR
updated 17 days ago by
Gordon Smyth
50k • written 11.5 years ago by
Maria Keays
▴ 30
0
votes
1
reply
203
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 28 days ago by
Gordon Smyth
50k • written 28 days ago by
scoops_streams_06
• 0
0
votes
2
replies
113
views
FilterByExpr low counts with small sample size
edgeR
1 day ago • updated 13 hours ago
Jonathan
▴ 10
0
votes
0
replies
35
views
Log-cpm values from limma
limma
edgeR
RNASeq
22 hours ago
Shaimaa Gamal
• 0
0
votes
0
replies
22
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
13 hours ago
prity6459
• 0
0
votes
6
replies
301
views
Doing comparison of RNA-seq data using EdgeR
metaMSdata
edgeR
updated 20 days ago by
Gordon Smyth
50k • written 21 days ago by
Faisal
• 0
0
votes
4
replies
384
views
Adjust RNA-seq counts (more than one batch variable) for plotting differentially expressed genes
ComBat
sva
edgeR
17 days ago • updated 16 days ago
Lucy
▴ 60
17 results • Page
1 of 1
Recent ...
Replies
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Awards
• All
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Locations
• All
China,
14 minutes ago
United States,
15 minutes ago
WEHI, Melbourne, Australia,
28 minutes ago
The city by the bay,
42 minutes ago
France,
49 minutes ago
Traffic: 552 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6