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salmon edgeR tximport nf-core gene_counts

updated 17 hours ago by i.atanasoai • 0 • written 14 months ago by mohammedtoufiq91 ▴ 10

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limma edgeR RNASeq

updated 20 hours ago by Gordon Smyth 50k • written 1 day ago by Shaimaa Gamal • 0

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DGEList edgeR

21 hours ago • updated 20 hours ago prity6459 • 0

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subsettingdata edgeR designmatrix

updated 19 hours ago by Gordon Smyth 50k • written 1 day ago by prity6459 • 0

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189

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edgeR

2 days ago • updated 13 hours ago Jonathan ▴ 10

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Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

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A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

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