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edgeR

updated 11 hours ago by Gordon Smyth 50k • written 14 hours ago by k___ ▴ 30

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DGEList edgeR

5 days ago prity6459 • 0

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124

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subsettingdata edgeR designmatrix

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by prity6459 • 0

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105

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limma edgeR RNASeq

updated 5 days ago by Gordon Smyth 50k • written 6 days ago by Shaimaa Gamal • 0

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315

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edgeR

6 days ago • updated 1 day ago Jonathan ▴ 10

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280

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rna-seq edgeR

updated 3 days ago by Gordon Smyth 50k • written 16 days ago by Netanel • 0

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1.5k

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salmon edgeR tximport nf-core gene_counts

updated 4 days ago by i.atanasoai • 0 • written 14 months ago by mohammedtoufiq91 ▴ 10

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7.8k

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deseq2 edgeR rna-seq

updated 5 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

8 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

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DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

Answer: Citation for edgeR user guide

Awards • All

Scholar to ATpoint ★ 4.0k