Bioconductor Edger

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edgeR

updated 6 hours ago by Gordon Smyth 50k • written 9 hours ago by k___ ▴ 30

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310

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edgeR

6 days ago • updated 1 day ago Jonathan ▴ 10

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DGEList edgeR

4 days ago prity6459 • 0

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122

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subsettingdata edgeR designmatrix

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by prity6459 • 0

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105

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limma edgeR RNASeq

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by Shaimaa Gamal • 0

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280

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rna-seq edgeR

updated 2 days ago by Gordon Smyth 50k • written 15 days ago by Netanel • 0

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1.5k

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salmon edgeR tximport nf-core gene_counts

updated 4 days ago by i.atanasoai • 0 • written 14 months ago by mohammedtoufiq91 ▴ 10

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7.8k

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deseq2 edgeR rna-seq

updated 5 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

8 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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