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Multi factor design edgeR/Deseq2
deseq2
edgeR
rna-seq
updated 10 hours ago by
Elizabeth
• 0 • written 8.8 years ago by
gthm
▴ 30
6
votes
8
replies
1.5k
views
Which input file is used for DGEList in EgdeR?
salmon
edgeR
tximport
nf-core
gene_counts
updated 5 days ago by
i.atanasoai
• 0 • written 14 months ago by
mohammedtoufiq91
▴ 10
5
votes
6
replies
374
views
Not fully paired differential gene expression analysis
edgeR
DifferentialExpression
updated 5 days ago by
ATpoint
★ 4.0k • written 9 days ago by
nhaus
▴ 30
3
votes
3
replies
256
views
permutation test in edgeR
rna-seq
edgeR
updated 3 days ago by
Gordon Smyth
50k • written 10 days ago by
Netanel
• 0
1
vote
3
replies
297
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 3 days ago by
Gordon Smyth
50k • written 8 days ago by
Simran
• 0
0
votes
2
replies
107
views
FilterByExpr low counts with small sample size
edgeR
1 day ago • updated 8 hours ago
Jonathan
▴ 10
0
votes
0
replies
16
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
7 hours ago
prity6459
• 0
0
votes
0
replies
33
views
Log-cpm values from limma
limma
edgeR
RNASeq
16 hours ago
Shaimaa Gamal
• 0
8 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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Peter Hickey
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shepherl
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