Showing : egsea • reset
0
votes
1
reply
264
views
EGSEA with Affymetrix data
EGSEA
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
1
reply
362
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA EGSEAdata EGSEA123 DifferentialExpression
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
1
reply
738
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea EGSEA123
12 months ago neilzhao ▴ 30
0
votes
3
replies
1.9k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 22 months ago by 3.8k • written 22 months ago by ★ 2.0k
6
votes
6
replies
2.8k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 3.5 years ago by • 0 • written 4.8 years ago by ▴ 70
1
vote
0
replies
709
views
EGSEA - clarification of values in the Stats Table
egsea limma
4.6 years ago rocanja ▴ 60
0
votes
2
replies
1.2k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA edgeR biomaRt limma RNA-seq
4.6 years ago fgol ▴ 10
9
votes
7
replies
20k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea gsva piano egsea
updated 4 months ago by ▴ 10 • written 6.7 years ago by ▴ 130
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 6.2 years ago by 50k • written 6.2 years ago by • 0
1
vote
0
replies
983
views
EGSEA install licensed KEGG data
EGSEA KEGG EGSEAdata
6.2 years ago john.thompson ▴ 10
0
votes
0
replies
838
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix egsea
6.2 years ago Stefano Mangiola ▴ 10
0
votes
5
replies
2.6k
views
EGSEA generateReport() error "no adj nodes"
EGSEA EGSEA123
updated 6.4 years ago by ▴ 40 • written 6.4 years ago by ★ 2.0k
1
vote
1
reply
1.1k
views
EGSEA : unable to plot heatmaps.
EGSEA R bioconductor
6.6 years ago RV • 0
0
votes
2
replies
1.5k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.0 years ago irizarnaunk • 0
2
votes
7
replies
1.8k
views
EGSEA - failing to write report
EGSEA write
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by ▴ 20
2
votes
3
replies
1.6k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
7.3 years ago • updated 7.2 years ago Pekka Kohonen ▴ 190
0
votes
4
replies
1.9k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 7.6 years ago by ▴ 40 • written 7.6 years ago by • 0
17 results • Page 1 of 1
Recent ...
Replies
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Awards • All
Popular Question to sropri • 0
Popular Question to W. Evan Johnson ▴ 850
Popular Question to Alejandro Reyes ★ 1.9k
Popular Question to shepherl 3.8k
Popular Question to Alessia • 0
Locations • All
United States, 1 minute ago
France, 10 minutes ago
United States, 11 minutes ago
Australia, 12 minutes ago
Wageningen University, Wageningen, the Netherlands, 12 minutes ago
Traffic: 674 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6