Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
egsea
•
reset
9
votes
7
replies
20k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 4 months ago by
amin8w
▴ 10 • written 6.7 years ago by
sina.nassiri
▴ 130
0
votes
1
reply
264
views
EGSEA with Affymetrix data
EGSEA
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
cverschoor
• 0
0
votes
1
reply
362
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA
EGSEAdata
EGSEA123
DifferentialExpression
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Tiago
• 0
0
votes
1
reply
738
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea
EGSEA123
12 months ago
neilzhao
▴ 30
0
votes
3
replies
1.9k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 22 months ago by
shepherl
3.8k • written 22 months ago by
Jenny Drnevich
★ 2.0k
6
votes
6
replies
2.8k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 3.5 years ago by
Martin
• 0 • written 4.8 years ago by
pgugger
▴ 70
1
vote
0
replies
709
views
EGSEA - clarification of values in the Stats Table
egsea
limma
4.6 years ago
rocanja
▴ 60
0
votes
2
replies
1.3k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
4.6 years ago
fgol
▴ 10
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
belmore
• 0
1
vote
0
replies
983
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
6.2 years ago
john.thompson
▴ 10
0
votes
0
replies
838
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
6.2 years ago
Stefano Mangiola
▴ 10
0
votes
5
replies
2.6k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 6.4 years ago by
Monther Alhamdoosh
▴ 40 • written 6.4 years ago by
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.1k
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
6.6 years ago
RV
• 0
0
votes
2
replies
1.5k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.0 years ago
irizarnaunk
• 0
2
votes
7
replies
1.8k
views
EGSEA - failing to write report
EGSEA
write
updated 7.2 years ago by
Monther Alhamdoosh
▴ 40 • written 7.2 years ago by
mforde84
▴ 20
2
votes
3
replies
1.6k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
7.3 years ago • updated 7.2 years ago
Pekka Kohonen
▴ 190
0
votes
4
replies
1.9k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 7.6 years ago by
Monther Alhamdoosh
▴ 40 • written 7.6 years ago by
yingchen
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Locations
• All
United States,
5 minutes ago
France,
10 minutes ago
WEHI, Melbourne, Australia,
17 minutes ago
United States,
23 minutes ago
Ireland,
30 minutes ago
Traffic: 659 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6