Bioconductor Emptydrops

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2.2k

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DropletUtils emptyDrops scRNA scRNAseq 10x

20 months ago Peter Hickey ▴ 700

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4.4k

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DropletUtils EmptyDrops simpleSingleCell

updated 20 months ago by Stefano Mangiola ▴ 10 • written 4.7 years ago by shbrief ▴ 20

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1.9k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.5 years ago by Aaron Lun ★ 28k • written 4.6 years ago by C T ▴ 140

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1.0k

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dropletutils emptydrops

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by rosano • 0

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643

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SingleCell emptyDrops 10X

updated 11 months ago by Peter Hickey ▴ 700 • written 11 months ago by sandra.garces.19 • 0

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182

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CellRanger emptyDrops scRNAseq 10X

28 days ago • updated 27 days ago rocanja ▴ 60

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1.0k

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DropletUtils emptyDrops 10x

updated 3.2 years ago by Aaron Lun ★ 28k • written 3.2 years ago by Peter Hickey ▴ 700

7 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Peter Hickey ▴ 700

> Only one thing, my data are actually CpG methylation :) No, the file you sent me is CX methylation (i.e. CpA, CpC, CpG, CpT), as is clea…

Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

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