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enhancedvolcano
•
reset
0
votes
2
replies
363
views
EnhancedVolcano with labels based on log2 Fold Change
EnhancedVolcano
written 3 months ago by
sara.jacobson
• 0
0
votes
4
replies
987
views
enhanced volcano , different -log10pvalue of the same gene
EnhancedVolcano
RNASeqData
DifferentialExpression
10 months ago
ruba-mahmoud
• 0
4
votes
5
replies
1.5k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 11 months ago by
Kevin Blighe
★ 3.9k • written 11 months ago by
Peter
▴ 20
0
votes
1
reply
448
views
Error in names(label_color[label_color == "organe"]) <- "lysosome" : 'names' attribute [1] must be the same length as the vector [0]
EnhancedVolcano
updated 12 months ago by
elefth.pavlos
▴ 40 • written 12 months ago by
Phương Thùy
• 0
2
votes
2
replies
901
views
Overlay points with EnhancedVolcano R
EnhancedVolcano
updated 13 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
redafazazi
• 0
0
votes
2
replies
527
views
Only display positive FC on volcano plot
EnhancedVolcano
updated 13 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
Tanner
• 0
2
votes
4
replies
1.9k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 16 months ago by
elefth.pavlos
▴ 40 • written 16 months ago by
Allison
• 0
0
votes
2
replies
817
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
17 months ago
elefth.pavlos
▴ 40
0
votes
2
replies
887
views
Unable to over/ride colour scheme with custom key-value pairs
EnhancedVolcano
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 17 months ago by
patrirodry85
• 0
0
votes
1
reply
1.5k
views
Enhanced Volcano Error when drawing connectors
EnhancedVolcano
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
deena.maurer
• 0
0
votes
0
replies
446
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
20 months ago
JAcky
• 0
0
votes
6
replies
2.1k
views
How to change all text, including point labels to Arial?
EnhancedVolcano
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
junli1988
• 0
0
votes
3
replies
826
views
change a column within a DESeq results object
EnhancedVolcano
updated 21 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
Matt
• 0
0
votes
5
replies
1.3k
views
Italicise
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Pau
• 0
3
votes
5
replies
2.3k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Bine
▴ 40
0
votes
0
replies
811
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
2.1 years ago
Somenath
• 0
1
vote
4
replies
1.5k
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
Jonathan
▴ 10
1
vote
1
reply
1.0k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 3 months ago by
mohamad.hajo89
• 0 • written 2.3 years ago by
ikotlar
▴ 10
1
vote
3
replies
1.4k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 2.3 years ago by
Kevin Blighe
★ 3.9k • written 2.3 years ago by
acharest
• 0
0
votes
0
replies
676
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
2.4 years ago
bradyb
• 0
0
votes
2
replies
1.5k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 2.5 years ago by
Raj
• 0
0
votes
5
replies
1.8k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Johannes
• 0
5
votes
4
replies
4.5k
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Rachel
• 0
2
votes
6
replies
3.8k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
2.7 years ago
Loren
▴ 10
2
votes
1
reply
4.5k
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
robledoj13
• 0
7
votes
8
replies
6.2k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
3.7k
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
3.0 years ago • updated 2.9 years ago
Neeraja Vegesna
▴ 10
1
vote
1
reply
2.0k
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
3.0 years ago
dk0319
• 0
6
votes
9
replies
2.0k
views
How to better design a Volcano plot
EnhancedVolcano
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
suxxa
▴ 20
1
vote
8
replies
3.3k
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
3.3 years ago
Peter
▴ 10
6
votes
8
replies
3.5k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
philipp.rewe
▴ 20
4
votes
2
replies
2.6k
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
3.4 years ago
noahhelton98
▴ 20
3
votes
5
replies
2.0k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
camillab.
▴ 10
1
vote
12
replies
1.6k
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
n.tear
▴ 20
0
votes
20
replies
3.1k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
3.6 years ago • updated 3.2 years ago
knholm
• 0
0
votes
1
reply
2.0k
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
knholm
• 0
4
votes
7
replies
2.4k
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
gaom001
▴ 10
0
votes
3
replies
816
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
rimss.khurana
• 0
1
vote
6
replies
21k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
4.5 years ago
sauuyer
▴ 10
0
votes
8
replies
12k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
ricardo3889
• 0
40 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
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by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
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The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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