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enhancedvolcano
•
reset
1
vote
6
replies
21k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
4.5 years ago
sauuyer
▴ 10
0
votes
8
replies
12k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
ricardo3889
• 0
7
votes
8
replies
6.2k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
Assa Yeroslaviz
★ 1.5k
5
votes
4
replies
4.5k
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Rachel
• 0
2
votes
1
reply
4.5k
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
robledoj13
• 0
2
votes
6
replies
3.8k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
2.7 years ago
Loren
▴ 10
1
vote
4
replies
3.7k
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
3.0 years ago • updated 2.9 years ago
Neeraja Vegesna
▴ 10
6
votes
8
replies
3.5k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
philipp.rewe
▴ 20
1
vote
8
replies
3.3k
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
3.3 years ago
Peter
▴ 10
0
votes
20
replies
3.1k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
3.6 years ago • updated 3.2 years ago
knholm
• 0
4
votes
2
replies
2.6k
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
3.4 years ago
noahhelton98
▴ 20
4
votes
7
replies
2.4k
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
gaom001
▴ 10
3
votes
5
replies
2.3k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Bine
▴ 40
0
votes
6
replies
2.1k
views
How to change all text, including point labels to Arial?
EnhancedVolcano
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
junli1988
• 0
1
vote
1
reply
2.0k
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
3.0 years ago
dk0319
• 0
0
votes
1
reply
2.0k
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
knholm
• 0
6
votes
9
replies
2.0k
views
How to better design a Volcano plot
EnhancedVolcano
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
suxxa
▴ 20
3
votes
5
replies
2.0k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
camillab.
▴ 10
2
votes
4
replies
1.9k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 16 months ago by
elefth.pavlos
▴ 40 • written 16 months ago by
Allison
• 0
0
votes
5
replies
1.8k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Johannes
• 0
1
vote
12
replies
1.6k
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
n.tear
▴ 20
4
votes
5
replies
1.5k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 11 months ago by
Kevin Blighe
★ 3.9k • written 11 months ago by
Peter
▴ 20
1
vote
4
replies
1.5k
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
Jonathan
▴ 10
0
votes
2
replies
1.5k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 2.5 years ago by
Raj
• 0
0
votes
1
reply
1.5k
views
Enhanced Volcano Error when drawing connectors
EnhancedVolcano
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
deena.maurer
• 0
1
vote
3
replies
1.4k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 2.3 years ago by
Kevin Blighe
★ 3.9k • written 2.3 years ago by
acharest
• 0
0
votes
5
replies
1.3k
views
Italicise
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Pau
• 0
1
vote
1
reply
1.0k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 3 months ago by
mohamad.hajo89
• 0 • written 2.3 years ago by
ikotlar
▴ 10
0
votes
4
replies
985
views
enhanced volcano , different -log10pvalue of the same gene
EnhancedVolcano
RNASeqData
DifferentialExpression
10 months ago
ruba-mahmoud
• 0
2
votes
2
replies
897
views
Overlay points with EnhancedVolcano R
EnhancedVolcano
updated 13 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
redafazazi
• 0
0
votes
2
replies
885
views
Unable to over/ride colour scheme with custom key-value pairs
EnhancedVolcano
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 17 months ago by
patrirodry85
• 0
0
votes
3
replies
822
views
change a column within a DESeq results object
EnhancedVolcano
updated 21 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
Matt
• 0
0
votes
2
replies
815
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
17 months ago
elefth.pavlos
▴ 40
0
votes
3
replies
813
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
rimss.khurana
• 0
0
votes
0
replies
807
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
2.1 years ago
Somenath
• 0
0
votes
0
replies
672
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
2.4 years ago
bradyb
• 0
0
votes
2
replies
523
views
Only display positive FC on volcano plot
EnhancedVolcano
updated 13 months ago by
Kevin Blighe
★ 3.9k • written 13 months ago by
Tanner
• 0
0
votes
1
reply
446
views
Error in names(label_color[label_color == "organe"]) <- "lysosome" : 'names' attribute [1] must be the same length as the vector [0]
EnhancedVolcano
updated 11 months ago by
elefth.pavlos
▴ 40 • written 12 months ago by
Phương Thùy
• 0
0
votes
0
replies
444
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
20 months ago
JAcky
• 0
0
votes
2
replies
361
views
EnhancedVolcano with labels based on log2 Fold Change
EnhancedVolcano
written 3 months ago by
sara.jacobson
• 0
40 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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