Bioconductor EnrichGO

Showing : enrichGO • reset

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clusterprofiler enrichGO barplot dotplot

5.7 years ago MAP • 0

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clusterProfiler enrichGO

2.4 years ago samsiljee • 0

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enrichGO

2.9 years ago dailing57 • 0

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clusterProfiler enrichGO

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by kavator ▴ 30

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software error enrichGO annotationHub clusterProfiler Job

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by bnajafpour • 0

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EnrichGO clusterProfiler

written 3.3 years ago by Carolina • 0

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clusterProfiler enrichGO

updated 9 weeks ago by Michael Love 41k • written 10 weeks ago by cinzia.spagnoli • 0

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clusterProfiler enrichGO

6.5 years ago Francois Marchildon ▴ 20

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clusterProfiler enrichGO

21 months ago Shakiba • 0

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R TAIR clusterProfiler enrichGO Arabidopsis

updated 3.0 years ago by Guido Hooiveld ★ 3.9k • written 3.0 years ago by abby-s • 0

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916

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ClusterProfiler enrichGO

updated 4.2 years ago by James W. MacDonald 65k • written 4.2 years ago by Reb • 0

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RNASeq simplify clusterProfiler enrichGO simplifyEnrichment

19 months ago estafana.t98 • 0

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enrichGO clusterprofiler

5.7 years ago MAP • 0

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clusterProfiler enrichGO clusterPro

2.4 years ago slimyMS • 0

14 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All

Scholar to Peter Hickey ▴ 740