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enrichKEGG
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13
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4.5k
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KEGG enrichment in R and gene IDs
KEGG
enrichKEGG
R
entrezid
13 months ago
Laia
▴ 10
2
votes
4
replies
3.0k
views
#clusterProfiler# KEGG enrichment with non-reference species
clusterprofiler
kaas
enrichKEGG
updated 6.8 years ago by
renuka.nayak
• 0 • written 7.6 years ago by
googneed
• 0
1
vote
2
replies
3.7k
views
cnetplot with enrichKEGG results
clusterProfiler
enrichKEGG
cnetplot
2.4 years ago
fatimaruizdelabastida
• 0
2
votes
2
replies
229
views
Error in enrichKEGG for a model organism
enrichKEGG
KEGGgraph
KEGG
updated 8 weeks ago by
Guido Hooiveld
★ 3.9k • written 8 weeks ago by
cinzia.spagnoli
• 0
0
votes
1
reply
1.5k
views
ClusterProfiler - enrichKEGG on specific pathways
kegg
enrichkegg
clusterprofiler
updated 4 months ago by
EvaLan
• 0 • written 5.7 years ago by
bekah
▴ 40
2
votes
1
reply
2.0k
views
enrichKEGG
clusterProfiler
enrichKEGG
updated 24 months ago by
Guido Hooiveld
★ 3.9k • written 24 months ago by
blim4
• 0
0
votes
0
replies
730
views
clusterProfiler GeneRatio minGSSize
enrichKEGG
GeneRatio
5.2 years ago
zhang.jianhai
▴ 10
0
votes
0
replies
1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
5.2 years ago
yurigorelik
▴ 10
8 results • Page
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Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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