Bioconductor Enrichment analysis

Showing : enrichment analysis • reset

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1.5k

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dmrcate enrichment analysis epic array goregion missmethyl

updated 3.2 years ago by Jovana Maksimovic ▴ 20 • written 4.2 years ago by yoursbassanio ▴ 10

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5.4k

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microarray limma kegg ENTREZ enrichment analysis

updated 4.6 years ago by Gordon Smyth 51k • written 4.6 years ago by omarrafiqued ▴ 50

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1.2k

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gosummaries gene ontology enrichment analysis

6.7 years ago jan.soderman • 0

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5.6k

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reactomepa pathway analysis enrichment analysis clusterprofiler

updated 6.9 years ago by Guangchuang Yu ★ 1.2k • written 6.9 years ago by Miguel.Cosenza ▴ 10

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3.9k

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clusterprofiler enrichment analysis

updated 7.8 years ago by Guangchuang Yu ★ 1.2k • written 7.8 years ago by fizer ▴ 40

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1.7k

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leading edge analysis enrichment analysis

8.0 years ago Adrian Johnson ▴ 330

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6.1k

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GSEA enrichment analysis gseabase

updated 8.3 years ago by Gordon Smyth 51k • written 8.3 years ago by Matthias Z. ▴ 20

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1.4k

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gene ontology goslim enrichment analysis gene annotation

8.5 years ago mirko • 0

8 results • Page 1 of 1

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k

``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

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Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Answer: How to control batch effect if Group and batch are same?

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k