Bioconductor Enrichment analysis

Showing : enrichment analysis • reset

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dmrcate enrichment analysis epic array goregion missmethyl

updated 2.2 years ago by Jovana Maksimovic ▴ 10 • written 3.2 years ago by yoursbassanio ▴ 10

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4.6k

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microarray limma kegg ENTREZ enrichment analysis

updated 3.6 years ago by Gordon Smyth 48k • written 3.6 years ago by omarrafiqued ▴ 50

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840

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gosummaries gene ontology enrichment analysis

5.7 years ago jan.soderman • 0

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3.9k

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reactomepa pathway analysis enrichment analysis clusterprofiler

updated 5.9 years ago by Guangchuang Yu ★ 1.2k • written 5.9 years ago by Miguel.Cosenza ▴ 10

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3.1k

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clusterprofiler enrichment analysis

updated 6.8 years ago by Guangchuang Yu ★ 1.2k • written 6.8 years ago by fizer ▴ 30

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1.4k

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leading edge analysis enrichment analysis

7.0 years ago Adrian Johnson ▴ 330

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4.9k

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GSEA enrichment analysis gseabase

updated 7.3 years ago by Gordon Smyth 48k • written 7.3 years ago by Matthias Z. ▴ 20

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1.1k

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gene ontology goslim enrichment analysis gene annotation

7.5 years ago mirko • 0

8 results • Page 1 of 1

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Answer: how to extract specific gene coordinates by passing a list of genes using homo by James W. MacDonald 63k

``` > subset(transcripts(Homo.sapiens, columns = "SYMBOL"), SYMBOL == "BRCA2") 'select()' returned 1:1 mapping between keys and columns …

Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

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Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

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