Showing : enrichplot • reset
8
votes
5
replies
3.9k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
4.9 years ago • updated 22 months ago charles.foster ▴ 160
5
votes
13
replies
4.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
3
votes
5
replies
3.1k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 19 months ago by ★ 1.2k • written 22 months ago by ▴ 30
2
votes
1
reply
687
views
Parsing geoms to enrichplot
enrichplot
3.7 years ago Francois Marchildon ▴ 20
2
votes
2
replies
218
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
29 days ago • updated 28 days ago Eva ▴ 10
2
votes
4
replies
2.5k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.5 years ago Pahi ▴ 10
2
votes
4
replies
2.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.2 years ago by 65k • written 4.2 years ago by ▴ 30
2
votes
6
replies
909
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
11 weeks ago • updated 8 weeks ago Tobias • 0
2
votes
6
replies
6.2k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.3 years ago Emilia ▴ 30
2
votes
4
replies
1.4k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
10 months ago Tyroone • 0
2
votes
3
replies
2.2k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 18 months ago by ▴ 120 • written 18 months ago by ▴ 10
1
vote
3
replies
5.3k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.0 years ago by ★ 3.2k • written 2.0 years ago by • 0
1
vote
4
replies
3.8k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.0 years ago by • 0 • written 2.7 years ago by • 0
1
vote
1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
2.4 years ago fatimaruizdelabastida • 0
0
votes
0
replies
332
views
HeatPlot - Genes selections
enrichplot stringr heatplot
7 months ago ruba-mahmoud • 0
0
votes
1
reply
1.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 18 months ago by ★ 1.2k • written 19 months ago by • 0
0
votes
1
reply
1.2k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 13 months ago by ★ 3.9k • written 13 months ago by • 0
0
votes
3
replies
1.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 5 months ago by • 0 • written 8 months ago by • 0
0
votes
5
replies
1.9k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 7 months ago by • 0 • written 16 months ago by • 0
0
votes
2
replies
568
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
0
replies
1.2k
views
EnrichGO
R enrichplot
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
0
votes
0
replies
1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.2 years ago yurigorelik ▴ 10
0
votes
1
reply
1.9k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
0
votes
0
replies
934
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.0 years ago jan.soderman • 0
0
votes
1
reply
1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.3 years ago by ▴ 30 • written 3.4 years ago by • 0
0
votes
1
reply
947
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 22 months ago by ★ 3.9k • written 22 months ago by ▴ 10
0
votes
5
replies
973
views
plot enrichment results
enrichplot clusterProfiler
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
0
votes
1
reply
90
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 2 days ago by ★ 3.9k • written 5 days ago by • 0
0
votes
2
replies
1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
2.5 years ago Adarsh • 0
0
votes
1
reply
640
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 14 months ago by 41k • written 15 months ago by • 0
0
votes
0
replies
1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.8 years ago jan.soderman • 0
0
votes
3
replies
3.5k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 21 months ago by ★ 3.9k • written 21 months ago by ▴ 10
0
votes
1
reply
218
views
visualizing GSEA showCategory question
enrichplot
updated 11 weeks ago by 65k • written 12 weeks ago by • 0
0
votes
1
reply
988
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.0 years ago by • 0 • written 2.2 years ago by ▴ 10
35 results • Page 1 of 1
Recent ...
Replies
Answer: SNP locus package for mouse? by James W. MacDonald 65k
There isn't (IIRC) an official way to do this, but [Herve has a GitHub][1] with a package that you could use if you are willing to put in t…
Answer: flowStats Search Error by James W. MacDonald 65k
A better approach is to click on the Packages header on the main site, then search on that page for flowStats, rather than searching the en…
Comment: geneList error in clusterprofiler by Ana • 0
Ahh thank you, that fixed it!
Answer: geneList error in clusterprofiler by Basti ▴ 750
Have a look at the documentation : https://www.rdocumentation.org/packages/clusterProfiler/versions/3.0.4/topics/gseGO geneList argument s…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks again for your answer, I will try to play a little bit with the parameters. Only one thing, my data are actually CpG methylation :)…
Votes
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
France/Marseille/Inserm, just now
United States, 3 minutes ago
Ghana/KNUST, 9 minutes ago
France, 14 minutes ago
United States, 22 minutes ago
Traffic: 802 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6