Bioconductor Enrichplot

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984

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enrichplot clusterProfiler

updated 9 months ago by Lluís Revilla Sancho ▴ 730 • written 9 months ago by Manuela • 0

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enrichplot GSEA clusterProfiler

updated 5 months ago by Fatemeh • 0 • written 8 months ago by Cen • 0

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579

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topGO enrichplot

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by nromerov • 0

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1.4k

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enrichplot clusterProfiler

11 months ago • updated 10 months ago Tyroone • 0

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231

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enrichplot barplot clusterProfiler

4 weeks ago Eva ▴ 10

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226

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enrichplot

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by Grace.Ciabattoni • 0

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111

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DOSE enrichplot clusterProfiler

updated 5 days ago by Guido Hooiveld ★ 3.9k • written 8 days ago by Lucie • 0

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928

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enrichplot

11 weeks ago • updated 8 weeks ago Tobias • 0

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335

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enrichplot stringr heatplot

7 months ago ruba-mahmoud • 0

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1.9k

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heatplot enrichplot

updated 7 months ago by ruba-mahmoud • 0 • written 16 months ago by Melanie • 0

10 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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