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enrichplot
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2
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6
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960
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Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
12 weeks ago • updated 9 weeks ago
Tobias
• 0
0
votes
5
replies
997
views
plot enrichment results
enrichplot
clusterProfiler
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 10 months ago by
Manuela
• 0
0
votes
5
replies
1.9k
views
How can I limit the number of displayed genes in heatplot
heatplot
enrichplot
updated 7 months ago by
ruba-mahmoud
• 0 • written 16 months ago by
Melanie
• 0
2
votes
4
replies
1.4k
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Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot
clusterProfiler
11 months ago
Tyroone
• 0
0
votes
3
replies
1.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot
GSEA
clusterProfiler
updated 6 months ago by
Fatemeh
• 0 • written 8 months ago by
Cen
• 0
2
votes
2
replies
237
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
5 weeks ago
Eva
▴ 10
0
votes
2
replies
584
views
enrichPlot error when plotting topGO results
topGO
enrichplot
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
nromerov
• 0
0
votes
1
reply
233
views
visualizing GSEA showCategory question
enrichplot
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
Grace.Ciabattoni
• 0
0
votes
1
reply
127
views
compareCluster dotplot: how to modify the genesets order
DOSE
enrichplot
clusterProfiler
updated 9 days ago by
Guido Hooiveld
★ 3.9k • written 13 days ago by
Lucie
• 0
0
votes
0
replies
344
views
HeatPlot - Genes selections
enrichplot
stringr
heatplot
7 months ago
ruba-mahmoud
• 0
10 results • Page
1 of 1
Recent ...
Replies
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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