Showing : enrichplot • reset
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104
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 3 days ago by ★ 3.9k • written 7 days ago by • 0
2
votes
2
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229
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
4 weeks ago Eva ▴ 10
2
votes
6
replies
926
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
11 weeks ago • updated 8 weeks ago Tobias • 0
0
votes
1
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223
views
visualizing GSEA showCategory question
enrichplot
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
0
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2
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576
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
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0
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334
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HeatPlot - Genes selections
enrichplot stringr heatplot
7 months ago ruba-mahmoud • 0
0
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3
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1.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 5 months ago by • 0 • written 8 months ago by • 0
0
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5
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981
views
plot enrichment results
enrichplot clusterProfiler
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
2
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4
replies
1.4k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
10 months ago Tyroone • 0
0
votes
1
reply
1.2k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 13 months ago by ★ 3.9k • written 13 months ago by • 0
0
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1
reply
642
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 15 months ago by 41k • written 15 months ago by • 0
0
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5
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1.9k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 7 months ago by • 0 • written 16 months ago by • 0
2
votes
3
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2.2k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 18 months ago by ▴ 120 • written 19 months ago by ▴ 10
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1
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1.5k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 18 months ago by ★ 1.2k • written 19 months ago by • 0
3
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5
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3.1k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 19 months ago by ★ 1.2k • written 22 months ago by ▴ 30
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3
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3.6k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 21 months ago by ★ 3.9k • written 21 months ago by ▴ 10
0
votes
1
reply
954
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 22 months ago by ★ 3.9k • written 22 months ago by ▴ 10
1
vote
3
replies
5.3k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.0 years ago by ★ 3.2k • written 2.0 years ago by • 0
0
votes
1
reply
990
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.0 years ago by • 0 • written 2.2 years ago by ▴ 10
5
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13
replies
4.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
1
vote
1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
2.4 years ago fatimaruizdelabastida • 0
0
votes
1
reply
1.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
0
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2
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1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
2.5 years ago Adarsh • 0
2
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4
replies
2.5k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.5 years ago Pahi ▴ 10
0
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0
replies
1.2k
views
EnrichGO
R enrichplot
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
1
vote
4
replies
3.9k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.0 years ago by • 0 • written 2.8 years ago by • 0
2
votes
6
replies
6.2k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.3 years ago Emilia ▴ 30
0
votes
1
reply
1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.3 years ago by ▴ 30 • written 3.4 years ago by • 0
2
votes
1
reply
689
views
Parsing geoms to enrichplot
enrichplot
3.7 years ago Francois Marchildon ▴ 20
0
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0
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935
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.0 years ago jan.soderman • 0
0
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1
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2.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
2
votes
4
replies
2.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.2 years ago by 65k • written 4.2 years ago by ▴ 30
8
votes
5
replies
4.0k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
4.9 years ago • updated 22 months ago charles.foster ▴ 160
0
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0
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1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.2 years ago yurigorelik ▴ 10
0
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0
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1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
35 results • Page 1 of 1
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Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0
Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.
Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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