Showing : enrichplot • reset
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117
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compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 6 days ago by ★ 3.9k • written 9 days ago by • 0
2
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2
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234
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padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
4 weeks ago Eva ▴ 10
2
votes
6
replies
931
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
11 weeks ago • updated 8 weeks ago Tobias • 0
0
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1
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226
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visualizing GSEA showCategory question
enrichplot
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
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2
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581
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
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0
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337
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HeatPlot - Genes selections
enrichplot stringr heatplot
7 months ago ruba-mahmoud • 0
0
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3
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1.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 5 months ago by • 0 • written 8 months ago by • 0
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5
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987
views
plot enrichment results
enrichplot clusterProfiler
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
2
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4
replies
1.4k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
11 months ago Tyroone • 0
0
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1
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1.2k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 13 months ago by ★ 3.9k • written 13 months ago by • 0
0
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1
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644
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 15 months ago by 41k • written 15 months ago by • 0
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5
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1.9k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 7 months ago by • 0 • written 16 months ago by • 0
2
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3
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2.2k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 19 months ago by ▴ 120 • written 19 months ago by ▴ 10
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1
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1.5k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 18 months ago by ★ 1.2k • written 19 months ago by • 0
3
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5
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3.1k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 19 months ago by ★ 1.2k • written 23 months ago by ▴ 30
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3
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3.6k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 21 months ago by ★ 3.9k • written 21 months ago by ▴ 10
0
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1
reply
961
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 22 months ago by ★ 3.9k • written 22 months ago by ▴ 10
1
vote
3
replies
5.3k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.0 years ago by ★ 3.2k • written 2.1 years ago by • 0
0
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1
reply
992
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Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
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13
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4.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
1
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1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
2.4 years ago fatimaruizdelabastida • 0
0
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1
reply
1.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
0
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2
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1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
2.5 years ago Adarsh • 0
2
votes
4
replies
2.6k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.5 years ago Pahi ▴ 10
0
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0
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1.2k
views
EnrichGO
R enrichplot
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
1
vote
4
replies
3.9k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.1 years ago by • 0 • written 2.8 years ago by • 0
2
votes
6
replies
6.2k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.3 years ago Emilia ▴ 30
0
votes
1
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1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.3 years ago by ▴ 30 • written 3.4 years ago by • 0
2
votes
1
reply
690
views
Parsing geoms to enrichplot
enrichplot
3.7 years ago Francois Marchildon ▴ 20
0
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0
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939
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.0 years ago jan.soderman • 0
0
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1
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2.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
2
votes
4
replies
2.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.2 years ago by 65k • written 4.3 years ago by ▴ 30
8
votes
5
replies
4.0k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
5.0 years ago • updated 22 months ago charles.foster ▴ 160
0
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0
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1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.2 years ago yurigorelik ▴ 10
0
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0
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1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
35 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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Scholar to Robert Castelo ★ 3.2k
Popular Question to James W. MacDonald 65k
Popular Question to shepherl 3.8k
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Popular Question to Gordon Smyth 50k
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