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enrichplot
•
reset
2
votes
2
replies
182
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot
barplot
clusterProfiler
10 days ago • updated 9 days ago
Eva
▴ 10
2
votes
6
replies
767
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
8 weeks ago • updated 5 weeks ago
Tobias
• 0
0
votes
1
reply
187
views
visualizing GSEA showCategory question
enrichplot
updated 9 weeks ago by
James W. MacDonald
65k • written 9 weeks ago by
Grace.Ciabattoni
• 0
0
votes
3
replies
1.2k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot
GSEA
clusterProfiler
updated 5 months ago by
Fatemeh
• 0 • written 7 months ago by
Cen
• 0
0
votes
2
replies
529
views
enrichPlot error when plotting topGO results
topGO
enrichplot
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
nromerov
• 0
0
votes
0
replies
309
views
HeatPlot - Genes selections
enrichplot
stringr
heatplot
6 months ago
ruba-mahmoud
• 0
0
votes
5
replies
1.8k
views
How can I limit the number of displayed genes in heatplot
heatplot
enrichplot
updated 7 months ago by
ruba-mahmoud
• 0 • written 15 months ago by
Melanie
• 0
0
votes
5
replies
927
views
plot enrichment results
enrichplot
clusterProfiler
updated 8 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
Manuela
• 0
2
votes
4
replies
1.3k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot
clusterProfiler
10 months ago
Tyroone
• 0
9 results • Page
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Recent ...
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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